Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11936 | 5' | -55.4 | NC_003278.1 | + | 32674 | 0.66 | 0.549641 |
Target: 5'- cCCcGCGgCCAGA---GUUUCGGCAa -3' miRNA: 3'- aGGuCGCgGGUCUaguCAAAGCCGUc -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 31917 | 0.67 | 0.505624 |
Target: 5'- gUCGGCGCCCGccggCGGcg-CGGCGGa -3' miRNA: 3'- aGGUCGCGGGUcua-GUCaaaGCCGUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 29199 | 0.78 | 0.100403 |
Target: 5'- aCCAGUGCCCAGGUCg----CGGCGGc -3' miRNA: 3'- aGGUCGCGGGUCUAGucaaaGCCGUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 28678 | 1.08 | 0.000554 |
Target: 5'- gUCCAGCGCCCAGAUCAGUUUCGGCAGc -3' miRNA: 3'- -AGGUCGCGGGUCUAGUCAAAGCCGUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 28651 | 0.68 | 0.463189 |
Target: 5'- cCCGGCGCCCA---CAGguacaccCGGCGGu -3' miRNA: 3'- aGGUCGCGGGUcuaGUCaaa----GCCGUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 27638 | 0.67 | 0.473628 |
Target: 5'- -aUAGCggGCCgGGAUCGGgaagCGGCAGu -3' miRNA: 3'- agGUCG--CGGgUCUAGUCaaa-GCCGUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 22018 | 0.74 | 0.17881 |
Target: 5'- gCCGGCGCgCCAGuucGUCGGUcgCGGCGa -3' miRNA: 3'- aGGUCGCG-GGUC---UAGUCAaaGCCGUc -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 21735 | 0.72 | 0.248771 |
Target: 5'- cUCGGCGCCagCGGcaGUCAGUaUCGGCGGc -3' miRNA: 3'- aGGUCGCGG--GUC--UAGUCAaAGCCGUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 20282 | 0.66 | 0.56084 |
Target: 5'- gCUGGCGUCCAGggCAGcauggcCGGCAc -3' miRNA: 3'- aGGUCGCGGGUCuaGUCaaa---GCCGUc -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 19155 | 0.71 | 0.299221 |
Target: 5'- gUCCGGCGCCCAGugaaacGUCAcGgccaggUCGGCc- -3' miRNA: 3'- -AGGUCGCGGGUC------UAGU-Caa----AGCCGuc -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 14080 | 0.66 | 0.538512 |
Target: 5'- gUCCGGCGUgaugcgcagguCCAGGcgggUCAGgugUCGGCuGa -3' miRNA: 3'- -AGGUCGCG-----------GGUCU----AGUCaa-AGCCGuC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 13781 | 0.7 | 0.31261 |
Target: 5'- cCCAGCgaucgacggagaacGCCCAGGcCAGguaCGGCAGa -3' miRNA: 3'- aGGUCG--------------CGGGUCUaGUCaaaGCCGUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 9666 | 0.66 | 0.578883 |
Target: 5'- gCCAGCGCCUGGcgCAGcugcugccgcugUUGGuCAGg -3' miRNA: 3'- aGGUCGCGGGUCuaGUCaa----------AGCC-GUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 9294 | 0.66 | 0.549641 |
Target: 5'- cUUCAGCGCCUuguguagcgccGGGUCGGUgUCGaugaaGCGGa -3' miRNA: 3'- -AGGUCGCGGG-----------UCUAGUCAaAGC-----CGUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 5950 | 0.7 | 0.331439 |
Target: 5'- aCCAG-GCCCGGGUCA----CGGCGGu -3' miRNA: 3'- aGGUCgCGGGUCUAGUcaaaGCCGUC- -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 2636 | 0.68 | 0.442681 |
Target: 5'- aUCAGCGCcugggCCAGGUCGGUccagcCGGCGu -3' miRNA: 3'- aGGUCGCG-----GGUCUAGUCAaa---GCCGUc -5' |
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11936 | 5' | -55.4 | NC_003278.1 | + | 2538 | 0.7 | 0.323152 |
Target: 5'- -aUAGCGCCCAGGcCAGa-UCGGCGu -3' miRNA: 3'- agGUCGCGGGUCUaGUCaaAGCCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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