miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11937 5' -59.2 NC_003278.1 + 13205 0.66 0.39814
Target:  5'- gGCGAUGgGCUgaCGGCCGaggCAUCGc- -3'
miRNA:   3'- -CGCUGCgCGA--GCCGGCgcaGUAGCua -5'
11937 5' -59.2 NC_003278.1 + 7517 0.66 0.397224
Target:  5'- cGCGGaucgcccaGCGCU-GGUCGCGgcgguagUCGUCGAUg -3'
miRNA:   3'- -CGCUg-------CGCGAgCCGGCGC-------AGUAGCUA- -5'
11937 5' -59.2 NC_003278.1 + 16718 0.66 0.389045
Target:  5'- gGUGACGUGCgaccagGGCgucgGUGUCGUCGAg -3'
miRNA:   3'- -CGCUGCGCGag----CCGg---CGCAGUAGCUa -5'
11937 5' -59.2 NC_003278.1 + 32600 0.67 0.362592
Target:  5'- cCGGCGCGCgcgGGCCGCGaCAgaGAa -3'
miRNA:   3'- cGCUGCGCGag-CCGGCGCaGUagCUa -5'
11937 5' -59.2 NC_003278.1 + 31634 0.67 0.354057
Target:  5'- gGCGGCGCcgcagGCUucaacCGGgCGCGUCcgCGGg -3'
miRNA:   3'- -CGCUGCG-----CGA-----GCCgGCGCAGuaGCUa -5'
11937 5' -59.2 NC_003278.1 + 22019 0.67 0.344833
Target:  5'- cCGGCGCGCcaguucgUCGGUCGCGgCGaCGAc -3'
miRNA:   3'- cGCUGCGCG-------AGCCGGCGCaGUaGCUa -5'
11937 5' -59.2 NC_003278.1 + 13142 0.68 0.305863
Target:  5'- gGCGAUGC-CUCGGCCGUcagccCAUCGc- -3'
miRNA:   3'- -CGCUGCGcGAGCCGGCGca---GUAGCua -5'
11937 5' -59.2 NC_003278.1 + 13317 0.68 0.276623
Target:  5'- aGCGACgGgGCgaCGGUCgGCGUCGUUGAg -3'
miRNA:   3'- -CGCUG-CgCGa-GCCGG-CGCAGUAGCUa -5'
11937 5' -59.2 NC_003278.1 + 4425 0.68 0.276623
Target:  5'- gGCGACcaCGgaCGGCCGCaaCAUCGAg -3'
miRNA:   3'- -CGCUGc-GCgaGCCGGCGcaGUAGCUa -5'
11937 5' -59.2 NC_003278.1 + 17231 0.7 0.207726
Target:  5'- cGCGACcaauaGCGCggucaUCGGCgGCGUCAgcgcCGAUg -3'
miRNA:   3'- -CGCUG-----CGCG-----AGCCGgCGCAGUa---GCUA- -5'
11937 5' -59.2 NC_003278.1 + 6615 0.73 0.141894
Target:  5'- cGCuuCGCGCguaccgcCGGCUGCGUCAUCGc- -3'
miRNA:   3'- -CGcuGCGCGa------GCCGGCGCAGUAGCua -5'
11937 5' -59.2 NC_003278.1 + 29385 0.73 0.138007
Target:  5'- gGCGACGUgGCggugcgCGGCgGCGUgAUCGAg -3'
miRNA:   3'- -CGCUGCG-CGa-----GCCGgCGCAgUAGCUa -5'
11937 5' -59.2 NC_003278.1 + 28846 1.08 0.000291
Target:  5'- cGCGACGCGCUCGGCCGCGUCAUCGAUg -3'
miRNA:   3'- -CGCUGCGCGAGCCGGCGCAGUAGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.