Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11937 | 5' | -59.2 | NC_003278.1 | + | 29385 | 0.73 | 0.138007 |
Target: 5'- gGCGACGUgGCggugcgCGGCgGCGUgAUCGAg -3' miRNA: 3'- -CGCUGCG-CGa-----GCCGgCGCAgUAGCUa -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 31634 | 0.67 | 0.354057 |
Target: 5'- gGCGGCGCcgcagGCUucaacCGGgCGCGUCcgCGGg -3' miRNA: 3'- -CGCUGCG-----CGA-----GCCgGCGCAGuaGCUa -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 22019 | 0.67 | 0.344833 |
Target: 5'- cCGGCGCGCcaguucgUCGGUCGCGgCGaCGAc -3' miRNA: 3'- cGCUGCGCG-------AGCCGGCGCaGUaGCUa -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 13142 | 0.68 | 0.305863 |
Target: 5'- gGCGAUGC-CUCGGCCGUcagccCAUCGc- -3' miRNA: 3'- -CGCUGCGcGAGCCGGCGca---GUAGCua -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 4425 | 0.68 | 0.276623 |
Target: 5'- gGCGACcaCGgaCGGCCGCaaCAUCGAg -3' miRNA: 3'- -CGCUGc-GCgaGCCGGCGcaGUAGCUa -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 17231 | 0.7 | 0.207726 |
Target: 5'- cGCGACcaauaGCGCggucaUCGGCgGCGUCAgcgcCGAUg -3' miRNA: 3'- -CGCUG-----CGCG-----AGCCGgCGCAGUa---GCUA- -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 6615 | 0.73 | 0.141894 |
Target: 5'- cGCuuCGCGCguaccgcCGGCUGCGUCAUCGc- -3' miRNA: 3'- -CGcuGCGCGa------GCCGGCGCAGUAGCua -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 13205 | 0.66 | 0.39814 |
Target: 5'- gGCGAUGgGCUgaCGGCCGaggCAUCGc- -3' miRNA: 3'- -CGCUGCgCGA--GCCGGCgcaGUAGCua -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 7517 | 0.66 | 0.397224 |
Target: 5'- cGCGGaucgcccaGCGCU-GGUCGCGgcgguagUCGUCGAUg -3' miRNA: 3'- -CGCUg-------CGCGAgCCGGCGC-------AGUAGCUA- -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 16718 | 0.66 | 0.389045 |
Target: 5'- gGUGACGUGCgaccagGGCgucgGUGUCGUCGAg -3' miRNA: 3'- -CGCUGCGCGag----CCGg---CGCAGUAGCUa -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 32600 | 0.67 | 0.362592 |
Target: 5'- cCGGCGCGCgcgGGCCGCGaCAgaGAa -3' miRNA: 3'- cGCUGCGCGag-CCGGCGCaGUagCUa -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 13317 | 0.68 | 0.276623 |
Target: 5'- aGCGACgGgGCgaCGGUCgGCGUCGUUGAg -3' miRNA: 3'- -CGCUG-CgCGa-GCCGG-CGCAGUAGCUa -5' |
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11937 | 5' | -59.2 | NC_003278.1 | + | 28846 | 1.08 | 0.000291 |
Target: 5'- cGCGACGCGCUCGGCCGCGUCAUCGAUg -3' miRNA: 3'- -CGCUGCGCGAGCCGGCGCAGUAGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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