Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11938 | 5' | -56.6 | NC_003278.1 | + | 29372 | 1.1 | 0.000344 |
Target: 5'- uGGCCACCGUCUUCAAGCCGGUGAGCUg -3' miRNA: 3'- -CCGGUGGCAGAAGUUCGGCCACUCGA- -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 9645 | 0.71 | 0.240818 |
Target: 5'- uGCCGCUGUUggUCAGGUCGGccUGGGCc -3' miRNA: 3'- cCGGUGGCAGa-AGUUCGGCC--ACUCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 30364 | 0.69 | 0.32025 |
Target: 5'- gGGCCAUCGUCaUCAGGguCUGcUGAGCg -3' miRNA: 3'- -CCGGUGGCAGaAGUUC--GGCcACUCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 2315 | 0.69 | 0.331662 |
Target: 5'- cGCCGCUGUCUauggaggggcuggcCAAGUCGGUGGGg- -3' miRNA: 3'- cCGGUGGCAGAa-------------GUUCGGCCACUCga -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 14201 | 0.67 | 0.437341 |
Target: 5'- cGCUGCCG-CgcCGAuGUCGGUGAGCa -3' miRNA: 3'- cCGGUGGCaGaaGUU-CGGCCACUCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 6727 | 0.67 | 0.447326 |
Target: 5'- uGCCGCCgGUCUUCuguGCCu-UGAGCg -3' miRNA: 3'- cCGGUGG-CAGAAGuu-CGGccACUCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 15299 | 0.67 | 0.467669 |
Target: 5'- cGCUACCGUCgaacguugUCGAGCCGcUGAcGUc -3' miRNA: 3'- cCGGUGGCAGa-------AGUUCGGCcACU-CGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 14271 | 0.66 | 0.488477 |
Target: 5'- cGCCGCCGgcgUCAccgaugAGCauaugGGUGGGCUg -3' miRNA: 3'- cCGGUGGCagaAGU------UCGg----CCACUCGA- -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 10380 | 0.66 | 0.499043 |
Target: 5'- cGGcCCAUCGaCcUCGauGGCCucGGUGAGCUg -3' miRNA: 3'- -CC-GGUGGCaGaAGU--UCGG--CCACUCGA- -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 6796 | 0.66 | 0.52047 |
Target: 5'- gGGCU-UCGUCgggcaugUCGgccuGGUCGGUGAGCa -3' miRNA: 3'- -CCGGuGGCAGa------AGU----UCGGCCACUCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 21054 | 0.66 | 0.531319 |
Target: 5'- uGCCGCCGUCguggCGGuGCUGGccGGCg -3' miRNA: 3'- cCGGUGGCAGaa--GUU-CGGCCacUCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 29332 | 0.66 | 0.499043 |
Target: 5'- uGGCCACCaUCgaUUAccugggcuacAGCCGG-GAGCa -3' miRNA: 3'- -CCGGUGGcAGa-AGU----------UCGGCCaCUCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 14465 | 0.66 | 0.499043 |
Target: 5'- aGGCCAgCGUCga-GAGC-GG-GAGCg -3' miRNA: 3'- -CCGGUgGCAGaagUUCGgCCaCUCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 31726 | 0.66 | 0.497981 |
Target: 5'- cGGCCuCCGcgaCUUCGagcgccuGGCCGGUGucccgGGCa -3' miRNA: 3'- -CCGGuGGCa--GAAGU-------UCGGCCAC-----UCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 12214 | 0.66 | 0.478017 |
Target: 5'- cGUCACCGg---CAAGgucaCGGUGAGCg -3' miRNA: 3'- cCGGUGGCagaaGUUCg---GCCACUCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 22919 | 0.69 | 0.353641 |
Target: 5'- uGGCCACCGUga--AAGCCGGcUGccuGCUc -3' miRNA: 3'- -CCGGUGGCAgaagUUCGGCC-ACu--CGA- -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 29644 | 0.74 | 0.168847 |
Target: 5'- aGGCCACCGg---CgAGGCCGGUGccGGCa -3' miRNA: 3'- -CCGGUGGCagaaG-UUCGGCCAC--UCGa -5' |
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11938 | 5' | -56.6 | NC_003278.1 | + | 26839 | 0.76 | 0.120155 |
Target: 5'- cGCCACCGcCaUCAGGCgCGGUGAGg- -3' miRNA: 3'- cCGGUGGCaGaAGUUCG-GCCACUCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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