miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 31807 0.68 0.167057
Target:  5'- aGCAG-GGUGCCcgggacaccgGCCAGGCGCucgaAGuCGCGg -3'
miRNA:   3'- -UGUCgCCGUGG----------UGGUCCGCG----UC-GCGC- -5'
11939 3' -62.8 NC_003278.1 + 7035 0.68 0.167057
Target:  5'- gGCAGauCGGCcCCgaGCC-GGCGgGGCGCGg -3'
miRNA:   3'- -UGUC--GCCGuGG--UGGuCCGCgUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 4305 0.68 0.167057
Target:  5'- -gGGCGGCGCUACUgagGGGCG-AGgGUGg -3'
miRNA:   3'- ugUCGCCGUGGUGG---UCCGCgUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 32178 0.68 0.171634
Target:  5'- -gAGUGGUuuCCGCCAcGGCGUAGC-CGa -3'
miRNA:   3'- ugUCGCCGu-GGUGGU-CCGCGUCGcGC- -5'
11939 3' -62.8 NC_003278.1 + 17091 0.68 0.171634
Target:  5'- uCGGCGGUgGCUACCAGGCcgaugaucGCGGUgGCGa -3'
miRNA:   3'- uGUCGCCG-UGGUGGUCCG--------CGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 2993 0.68 0.157801
Target:  5'- cCAGCcacaccuGGCgAUCACCGaacGGcCGCAGCGCGa -3'
miRNA:   3'- uGUCG-------CCG-UGGUGGU---CC-GCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19750 0.69 0.130573
Target:  5'- -uGGcCGGCACCGgCAuGGCGgCAcGCGCGa -3'
miRNA:   3'- ugUC-GCCGUGGUgGU-CCGC-GU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 32590 0.69 0.149011
Target:  5'- uACGGCGuGCGCCGCUggaccgacaccucGGGCGCcaucaucGGCGUc -3'
miRNA:   3'- -UGUCGC-CGUGGUGG-------------UCCGCG-------UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 1752 0.69 0.141834
Target:  5'- --cGCGGUcuucAgCGCCGuGCGCAGCGCGu -3'
miRNA:   3'- uguCGCCG----UgGUGGUcCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21652 0.69 0.136849
Target:  5'- aGCGcCGGCGCCAUCGgugcccuggugcucGGCGCcAGCGCc -3'
miRNA:   3'- -UGUcGCCGUGGUGGU--------------CCGCG-UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 6311 0.69 0.134232
Target:  5'- gGCGGCGGCcacuGCCccgcACCAGG-GCauggaaGGCGCGa -3'
miRNA:   3'- -UGUCGCCG----UGG----UGGUCCgCG------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 2053 0.69 0.134232
Target:  5'- cCAGCGGCGCCugCAGcG-GCAuccGCGUa -3'
miRNA:   3'- uGUCGCCGUGGugGUC-CgCGU---CGCGc -5'
11939 3' -62.8 NC_003278.1 + 9450 0.69 0.145382
Target:  5'- -gGGCGGCGCuguacaaCACCuGGCGCAGaaggcucaCGCGc -3'
miRNA:   3'- ugUCGCCGUG-------GUGGuCCGCGUC--------GCGC- -5'
11939 3' -62.8 NC_003278.1 + 9674 0.69 0.145782
Target:  5'- cGCGGaUGGcCAgCGCCuGGCGCAGCuGCu -3'
miRNA:   3'- -UGUC-GCC-GUgGUGGuCCGCGUCG-CGc -5'
11939 3' -62.8 NC_003278.1 + 15589 0.69 0.145782
Target:  5'- gUAGCGGCcaGCCACUGGGC-CAuucGCGUGa -3'
miRNA:   3'- uGUCGCCG--UGGUGGUCCGcGU---CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 23087 0.69 0.141834
Target:  5'- --cGCGGUcgGCCugCAGGUaGCGGUGCu -3'
miRNA:   3'- uguCGCCG--UGGugGUCCG-CGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 5967 0.69 0.137985
Target:  5'- --cGCGGCcgaggaucACCACCAGGCccgggucacgGCGGUGCc -3'
miRNA:   3'- uguCGCCG--------UGGUGGUCCG----------CGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 32641 0.69 0.137605
Target:  5'- cCAGCGGCGCaCGCCGuacugcuGGUauuGCAGgGCGu -3'
miRNA:   3'- uGUCGCCGUG-GUGGU-------CCG---CGUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 18220 0.69 0.134232
Target:  5'- gACGGCGGUAgCUACCAGG-GCGuCGUGa -3'
miRNA:   3'- -UGUCGCCGU-GGUGGUCCgCGUcGCGC- -5'
11939 3' -62.8 NC_003278.1 + 11819 0.7 0.127006
Target:  5'- cGCGGUGG-ACCAUgccGCGCAGCGCGu -3'
miRNA:   3'- -UGUCGCCgUGGUGgucCGCGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.