miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 13194 0.7 0.109566
Target:  5'- gACGGCcgaGGCAUCGCCGacgcgaccgucggcGGCGCGgGCGUGg -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--------------CCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 12281 0.7 0.11684
Target:  5'- cACGGCGGCGucaUACCGGGCG--GCGCu -3'
miRNA:   3'- -UGUCGCCGUg--GUGGUCCGCguCGCGc -5'
11939 3' -62.8 NC_003278.1 + 11819 0.7 0.127006
Target:  5'- cGCGGUGG-ACCAUgccGCGCAGCGCGu -3'
miRNA:   3'- -UGUCGCCgUGGUGgucCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 32491 0.7 0.11684
Target:  5'- gACAGCacgGGCACCAUCGccGGuCGCAGCaGCc -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--CC-GCGUCG-CGc -5'
11939 3' -62.8 NC_003278.1 + 31135 0.71 0.101569
Target:  5'- cCAGCGGaCAaacacCCGCCuGGCGCccAGCGCc -3'
miRNA:   3'- uGUCGCC-GU-----GGUGGuCCGCG--UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 23247 0.71 0.090727
Target:  5'- -aGGCGGUuCCACUcGGCGCgggcGGCGCGc -3'
miRNA:   3'- ugUCGCCGuGGUGGuCCGCG----UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 26663 0.71 0.093329
Target:  5'- gGCGGCGGCGcauucgcguCCGCCAGG-GUAgGCGCc -3'
miRNA:   3'- -UGUCGCCGU---------GGUGGUCCgCGU-CGCGc -5'
11939 3' -62.8 NC_003278.1 + 28914 0.71 0.096003
Target:  5'- uCGGCGGCACUcUCGGcGaucaGCAGCGCGc -3'
miRNA:   3'- uGUCGCCGUGGuGGUC-Cg---CGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 15790 0.71 0.096003
Target:  5'- cCAGCu-CGCCAUCGGGCGCGuGUGCGa -3'
miRNA:   3'- uGUCGccGUGGUGGUCCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 31679 0.71 0.098749
Target:  5'- --uGCGGCGCCGCCgcccAGGCcGCAGCa-- -3'
miRNA:   3'- uguCGCCGUGGUGG----UCCG-CGUCGcgc -5'
11939 3' -62.8 NC_003278.1 + 18083 0.72 0.085726
Target:  5'- aGCGGCGGCACCG--GGGUGUAGuCGUa -3'
miRNA:   3'- -UGUCGCCGUGGUggUCCGCGUC-GCGc -5'
11939 3' -62.8 NC_003278.1 + 22880 0.72 0.078715
Target:  5'- uCGGCaGGC-CCGCCAGcGC-CGGCGCGa -3'
miRNA:   3'- uGUCG-CCGuGGUGGUC-CGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 31920 0.72 0.080989
Target:  5'- cCGGuCGGCGcCCGCCGgcGGCGCGGCGg- -3'
miRNA:   3'- uGUC-GCCGU-GGUGGU--CCGCGUCGCgc -5'
11939 3' -62.8 NC_003278.1 + 26829 0.72 0.088193
Target:  5'- cCAGgGGCgucgccaccGCCAUCAGGCGCGGUGa- -3'
miRNA:   3'- uGUCgCCG---------UGGUGGUCCGCGUCGCgc -5'
11939 3' -62.8 NC_003278.1 + 23160 0.72 0.080989
Target:  5'- uACAGCG--ACCGCCAGaGCGCccuGCGCGc -3'
miRNA:   3'- -UGUCGCcgUGGUGGUC-CGCGu--CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 32350 0.73 0.072255
Target:  5'- cCGGCGGCgucgauAUCGCCGGGCaGCGGCauGCGg -3'
miRNA:   3'- uGUCGCCG------UGGUGGUCCG-CGUCG--CGC- -5'
11939 3' -62.8 NC_003278.1 + 21413 0.73 0.070217
Target:  5'- --cGCGGCGCCGCCGacGCGCuggacGGCGCGc -3'
miRNA:   3'- uguCGCCGUGGUGGUc-CGCG-----UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21098 0.73 0.066115
Target:  5'- gACGGCGGCaauugccaggACCACCGGGUugGCggccaggccccacAGCGCGa -3'
miRNA:   3'- -UGUCGCCG----------UGGUGGUCCG--CG-------------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 14131 0.74 0.057424
Target:  5'- uACGGCGGCcuGCuCACCGacaucGGCGCGGCaGCGc -3'
miRNA:   3'- -UGUCGCCG--UG-GUGGU-----CCGCGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 34572 0.74 0.057424
Target:  5'- -aGGUGGCcauGCCACCAGccguuGCGCAGCGUa -3'
miRNA:   3'- ugUCGCCG---UGGUGGUC-----CGCGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.