miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 26829 0.72 0.088193
Target:  5'- cCAGgGGCgucgccaccGCCAUCAGGCGCGGUGa- -3'
miRNA:   3'- uGUCgCCG---------UGGUGGUCCGCGUCGCgc -5'
11939 3' -62.8 NC_003278.1 + 31679 0.71 0.098749
Target:  5'- --uGCGGCGCCGCCgcccAGGCcGCAGCa-- -3'
miRNA:   3'- uguCGCCGUGGUGG----UCCG-CGUCGcgc -5'
11939 3' -62.8 NC_003278.1 + 28914 0.71 0.096003
Target:  5'- uCGGCGGCACUcUCGGcGaucaGCAGCGCGc -3'
miRNA:   3'- uGUCGCCGUGGuGGUC-Cg---CGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 23247 0.71 0.090727
Target:  5'- -aGGCGGUuCCACUcGGCGCgggcGGCGCGc -3'
miRNA:   3'- ugUCGCCGuGGUGGuCCGCG----UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 31135 0.71 0.101569
Target:  5'- cCAGCGGaCAaacacCCGCCuGGCGCccAGCGCc -3'
miRNA:   3'- uGUCGCC-GU-----GGUGGuCCGCG--UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 26663 0.71 0.093329
Target:  5'- gGCGGCGGCGcauucgcguCCGCCAGG-GUAgGCGCc -3'
miRNA:   3'- -UGUCGCCGU---------GGUGGUCCgCGU-CGCGc -5'
11939 3' -62.8 NC_003278.1 + 15790 0.71 0.096003
Target:  5'- cCAGCu-CGCCAUCGGGCGCGuGUGCGa -3'
miRNA:   3'- uGUCGccGUGGUGGUCCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 12170 0.7 0.126654
Target:  5'- uCGGUGGUACCGCCGGcgggaagaacugcGCGCAG-GUGg -3'
miRNA:   3'- uGUCGCCGUGGUGGUC-------------CGCGUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 32491 0.7 0.11684
Target:  5'- gACAGCacgGGCACCAUCGccGGuCGCAGCaGCc -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--CC-GCGUCG-CGc -5'
11939 3' -62.8 NC_003278.1 + 12281 0.7 0.11684
Target:  5'- cACGGCGGCGucaUACCGGGCG--GCGCu -3'
miRNA:   3'- -UGUCGCCGUg--GUGGUCCGCguCGCGc -5'
11939 3' -62.8 NC_003278.1 + 11819 0.7 0.127006
Target:  5'- cGCGGUGG-ACCAUgccGCGCAGCGCGu -3'
miRNA:   3'- -UGUCGCCgUGGUGgucCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 13194 0.7 0.109566
Target:  5'- gACGGCcgaGGCAUCGCCGacgcgaccgucggcGGCGCGgGCGUGg -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--------------CCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19750 0.69 0.130573
Target:  5'- -uGGcCGGCACCGgCAuGGCGgCAcGCGCGa -3'
miRNA:   3'- ugUC-GCCGUGGUgGU-CCGC-GU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 1752 0.69 0.141834
Target:  5'- --cGCGGUcuucAgCGCCGuGCGCAGCGCGu -3'
miRNA:   3'- uguCGCCG----UgGUGGUcCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 5967 0.69 0.137985
Target:  5'- --cGCGGCcgaggaucACCACCAGGCccgggucacgGCGGUGCc -3'
miRNA:   3'- uguCGCCG--------UGGUGGUCCG----------CGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 18220 0.69 0.134232
Target:  5'- gACGGCGGUAgCUACCAGG-GCGuCGUGa -3'
miRNA:   3'- -UGUCGCCGU-GGUGGUCCgCGUcGCGC- -5'
11939 3' -62.8 NC_003278.1 + 32641 0.69 0.137605
Target:  5'- cCAGCGGCGCaCGCCGuacugcuGGUauuGCAGgGCGu -3'
miRNA:   3'- uGUCGCCGUG-GUGGU-------CCG---CGUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 2053 0.69 0.134232
Target:  5'- cCAGCGGCGCCugCAGcG-GCAuccGCGUa -3'
miRNA:   3'- uGUCGCCGUGGugGUC-CgCGU---CGCGc -5'
11939 3' -62.8 NC_003278.1 + 9450 0.69 0.145382
Target:  5'- -gGGCGGCGCuguacaaCACCuGGCGCAGaaggcucaCGCGc -3'
miRNA:   3'- ugUCGCCGUG-------GUGGuCCGCGUC--------GCGC- -5'
11939 3' -62.8 NC_003278.1 + 15589 0.69 0.145782
Target:  5'- gUAGCGGCcaGCCACUGGGC-CAuucGCGUGa -3'
miRNA:   3'- uGUCGCCG--UGGUGGUCCGcGU---CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.