miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 9449 0.67 0.201504
Target:  5'- aGCAGCaGCGCaucgACCuGGCGCAG-GCc -3'
miRNA:   3'- -UGUCGcCGUGg---UGGuCCGCGUCgCGc -5'
11939 3' -62.8 NC_003278.1 + 26565 0.67 0.212423
Target:  5'- --cGCGGC---GCCAGGUGguCAGCGCGa -3'
miRNA:   3'- uguCGCCGuggUGGUCCGC--GUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 23031 0.67 0.201504
Target:  5'- --uGCGGCAgCGCCAGGCcgcugGCAGUcuuGCc -3'
miRNA:   3'- uguCGCCGUgGUGGUCCG-----CGUCG---CGc -5'
11939 3' -62.8 NC_003278.1 + 19970 0.67 0.191075
Target:  5'- gACAGCGGCagggugcggGCCugUuGcCGCAGCGCc -3'
miRNA:   3'- -UGUCGCCG---------UGGugGuCcGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 4373 0.67 0.212423
Target:  5'- -gAGgGGCAUguUCGGGaCGCGcGCGCGg -3'
miRNA:   3'- ugUCgCCGUGguGGUCC-GCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 31222 0.67 0.186041
Target:  5'- cGCAGUccucGCACCAgaGGGCGCugGGCGCc -3'
miRNA:   3'- -UGUCGc---CGUGGUggUCCGCG--UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 4004 0.67 0.181123
Target:  5'- uGCAuCGGCAgCuugagcGCCAGGCGCGGauccaGCGc -3'
miRNA:   3'- -UGUcGCCGUgG------UGGUCCGCGUCg----CGC- -5'
11939 3' -62.8 NC_003278.1 + 27170 0.67 0.186041
Target:  5'- -aGGUGGCGCCG-CAGaGCGCGuuugugcauuGCGCGu -3'
miRNA:   3'- ugUCGCCGUGGUgGUC-CGCGU----------CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 5445 0.67 0.201504
Target:  5'- uCAGCGGCACCaucGCCAGcCGUaccgauaccacuGGCGaCGg -3'
miRNA:   3'- uGUCGCCGUGG---UGGUCcGCG------------UCGC-GC- -5'
11939 3' -62.8 NC_003278.1 + 32073 0.67 0.20311
Target:  5'- uCAGCGGCACCgggucaucagcccauGCCucGCccaucagccagauGCAGCGCa -3'
miRNA:   3'- uGUCGCCGUGG---------------UGGucCG-------------CGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 16969 0.67 0.201504
Target:  5'- uGCAGUGGUuggaugacACUGCaCAGGCuGCcGCGCGc -3'
miRNA:   3'- -UGUCGCCG--------UGGUG-GUCCG-CGuCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19812 0.67 0.191075
Target:  5'- --cGCGcGUGCCGCCAugccggugccGGC-CAGCGCGg -3'
miRNA:   3'- uguCGC-CGUGGUGGU----------CCGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 10429 0.67 0.181123
Target:  5'- uCGGCGGCGuCCACUcGGCcaGCAGCuCGc -3'
miRNA:   3'- uGUCGCCGU-GGUGGuCCG--CGUCGcGC- -5'
11939 3' -62.8 NC_003278.1 + 22471 0.66 0.229753
Target:  5'- aACAcCGGCACCggauaGCC-GGCGUcGCGCu -3'
miRNA:   3'- -UGUcGCCGUGG-----UGGuCCGCGuCGCGc -5'
11939 3' -62.8 NC_003278.1 + 19226 0.66 0.229753
Target:  5'- uCGGCGGaacuCCGuacCCGGGCGCGuucGCGCc -3'
miRNA:   3'- uGUCGCCgu--GGU---GGUCCGCGU---CGCGc -5'
11939 3' -62.8 NC_003278.1 + 23208 0.66 0.223848
Target:  5'- -uGGCGGUcgCugUAGGUGUGGCGCa -3'
miRNA:   3'- ugUCGCCGugGugGUCCGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 8148 0.66 0.218071
Target:  5'- gACAGCaGGCGCgACCAGGCcuucagguccuGCuucGUGCc -3'
miRNA:   3'- -UGUCG-CCGUGgUGGUCCG-----------CGu--CGCGc -5'
11939 3' -62.8 NC_003278.1 + 21469 0.66 0.218071
Target:  5'- gGCcuCGGCGCCgGCCAGGCcgGCccgcugGGCGUGa -3'
miRNA:   3'- -UGucGCCGUGG-UGGUCCG--CG------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 7827 0.66 0.223848
Target:  5'- cCGGCGGUgcgaccguaguGCCGCCA-GCaCAGCGCc -3'
miRNA:   3'- uGUCGCCG-----------UGGUGGUcCGcGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 9123 0.66 0.217501
Target:  5'- gGCGGCGGUaucgucgaucugGCgagcguuCGCCAGGCGCuGGUGCn -3'
miRNA:   3'- -UGUCGCCG------------UG-------GUGGUCCGCG-UCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.