Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11939 | 3' | -62.8 | NC_003278.1 | + | 5149 | 0.67 | 0.191075 |
Target: 5'- aGCAGCGGCccccggUCACCGguGGCGgCAGUGUc -3' miRNA: 3'- -UGUCGCCGu-----GGUGGU--CCGC-GUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 19970 | 0.67 | 0.191075 |
Target: 5'- gACAGCGGCagggugcggGCCugUuGcCGCAGCGCc -3' miRNA: 3'- -UGUCGCCG---------UGGugGuCcGCGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 6361 | 0.67 | 0.196229 |
Target: 5'- gGCAGUGGcCGCCGCCucuugagcGGCGguCAcGCGCa -3' miRNA: 3'- -UGUCGCC-GUGGUGGu-------CCGC--GU-CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 12083 | 0.67 | 0.196229 |
Target: 5'- gACAGCGcagccCACCACCuGcGCGCAGUucuucccgccgGCGg -3' miRNA: 3'- -UGUCGCc----GUGGUGGuC-CGCGUCG-----------CGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 22385 | 0.67 | 0.196229 |
Target: 5'- cCAGCGcCGuCgACCAGuuGCAGCGCGa -3' miRNA: 3'- uGUCGCcGU-GgUGGUCcgCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 5445 | 0.67 | 0.201504 |
Target: 5'- uCAGCGGCACCaucGCCAGcCGUaccgauaccacuGGCGaCGg -3' miRNA: 3'- uGUCGCCGUGG---UGGUCcGCG------------UCGC-GC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23031 | 0.67 | 0.201504 |
Target: 5'- --uGCGGCAgCGCCAGGCcgcugGCAGUcuuGCc -3' miRNA: 3'- uguCGCCGUgGUGGUCCG-----CGUCG---CGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 16969 | 0.67 | 0.201504 |
Target: 5'- uGCAGUGGUuggaugacACUGCaCAGGCuGCcGCGCGc -3' miRNA: 3'- -UGUCGCCG--------UGGUG-GUCCG-CGuCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9449 | 0.67 | 0.201504 |
Target: 5'- aGCAGCaGCGCaucgACCuGGCGCAG-GCc -3' miRNA: 3'- -UGUCGcCGUGg---UGGuCCGCGUCgCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 32073 | 0.67 | 0.20311 |
Target: 5'- uCAGCGGCACCgggucaucagcccauGCCucGCccaucagccagauGCAGCGCa -3' miRNA: 3'- uGUCGCCGUGG---------------UGGucCG-------------CGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 21710 | 0.67 | 0.206901 |
Target: 5'- cCAG-GGCACCGau-GGCGCcGGCGCu -3' miRNA: 3'- uGUCgCCGUGGUgguCCGCG-UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 4373 | 0.67 | 0.212423 |
Target: 5'- -gAGgGGCAUguUCGGGaCGCGcGCGCGg -3' miRNA: 3'- ugUCgCCGUGguGGUCC-GCGU-CGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 26565 | 0.67 | 0.212423 |
Target: 5'- --cGCGGC---GCCAGGUGguCAGCGCGa -3' miRNA: 3'- uguCGCCGuggUGGUCCGC--GUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9123 | 0.66 | 0.217501 |
Target: 5'- gGCGGCGGUaucgucgaucugGCgagcguuCGCCAGGCGCuGGUGCn -3' miRNA: 3'- -UGUCGCCG------------UG-------GUGGUCCGCG-UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 21469 | 0.66 | 0.218071 |
Target: 5'- gGCcuCGGCGCCgGCCAGGCcgGCccgcugGGCGUGa -3' miRNA: 3'- -UGucGCCGUGG-UGGUCCG--CG------UCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 16715 | 0.66 | 0.218071 |
Target: 5'- uCAGCacugaGCAgUACCAGGCGCugcaGGCGUa -3' miRNA: 3'- uGUCGc----CGUgGUGGUCCGCG----UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 8148 | 0.66 | 0.218071 |
Target: 5'- gACAGCaGGCGCgACCAGGCcuucagguccuGCuucGUGCc -3' miRNA: 3'- -UGUCG-CCGUGgUGGUCCG-----------CGu--CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23208 | 0.66 | 0.223848 |
Target: 5'- -uGGCGGUcgCugUAGGUGUGGCGCa -3' miRNA: 3'- ugUCGCCGugGugGUCCGCGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 26867 | 0.66 | 0.223848 |
Target: 5'- gACcGCauCAUCGCCgAGGCGCuGCGCGa -3' miRNA: 3'- -UGuCGccGUGGUGG-UCCGCGuCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 31191 | 0.66 | 0.223848 |
Target: 5'- aGCAGauacccgaGGCccGCCGCCAGGCuGCuccgGGCuGCGa -3' miRNA: 3'- -UGUCg-------CCG--UGGUGGUCCG-CG----UCG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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