miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 9027 0.75 0.04426
Target:  5'- cCGGCGGCACCGCCGaGCacCAGCGCc -3'
miRNA:   3'- uGUCGCCGUGGUGGUcCGc-GUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 9077 0.74 0.057259
Target:  5'- uCGGCGGUGCCGCCggcauagccgcccGGGCGaggguucacCAGCGCGg -3'
miRNA:   3'- uGUCGCCGUGGUGG-------------UCCGC---------GUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 9123 0.66 0.217501
Target:  5'- gGCGGCGGUaucgucgaucugGCgagcguuCGCCAGGCGCuGGUGCn -3'
miRNA:   3'- -UGUCGCCG------------UG-------GUGGUCCGCG-UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 9153 0.66 0.246357
Target:  5'- uCAGCGuGCAggccuucgccgaguCCAUgGGGCGUAGCGa- -3'
miRNA:   3'- uGUCGC-CGU--------------GGUGgUCCGCGUCGCgc -5'
11939 3' -62.8 NC_003278.1 + 9449 0.67 0.201504
Target:  5'- aGCAGCaGCGCaucgACCuGGCGCAG-GCc -3'
miRNA:   3'- -UGUCGcCGUGg---UGGuCCGCGUCgCGc -5'
11939 3' -62.8 NC_003278.1 + 9450 0.69 0.145382
Target:  5'- -gGGCGGCGCuguacaaCACCuGGCGCAGaaggcucaCGCGc -3'
miRNA:   3'- ugUCGCCGUG-------GUGGuCCGCGUC--------GCGC- -5'
11939 3' -62.8 NC_003278.1 + 9608 0.77 0.036105
Target:  5'- gGCAGCaGCugCGCCAGGCGCuGGCcauccGCGa -3'
miRNA:   3'- -UGUCGcCGugGUGGUCCGCG-UCG-----CGC- -5'
11939 3' -62.8 NC_003278.1 + 9674 0.69 0.145782
Target:  5'- cGCGGaUGGcCAgCGCCuGGCGCAGCuGCu -3'
miRNA:   3'- -UGUC-GCC-GUgGUGGuCCGCGUCG-CGc -5'
11939 3' -62.8 NC_003278.1 + 10429 0.67 0.181123
Target:  5'- uCGGCGGCGuCCACUcGGCcaGCAGCuCGc -3'
miRNA:   3'- uGUCGCCGU-GGUGGuCCG--CGUCGcGC- -5'
11939 3' -62.8 NC_003278.1 + 11819 0.7 0.127006
Target:  5'- cGCGGUGG-ACCAUgccGCGCAGCGCGu -3'
miRNA:   3'- -UGUCGCCgUGGUGgucCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 12083 0.67 0.196229
Target:  5'- gACAGCGcagccCACCACCuGcGCGCAGUucuucccgccgGCGg -3'
miRNA:   3'- -UGUCGCc----GUGGUGGuC-CGCGUCG-----------CGC- -5'
11939 3' -62.8 NC_003278.1 + 12170 0.7 0.126654
Target:  5'- uCGGUGGUACCGCCGGcgggaagaacugcGCGCAG-GUGg -3'
miRNA:   3'- uGUCGCCGUGGUGGUC-------------CGCGUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 12281 0.7 0.11684
Target:  5'- cACGGCGGCGucaUACCGGGCG--GCGCu -3'
miRNA:   3'- -UGUCGCCGUg--GUGGUCCGCguCGCGc -5'
11939 3' -62.8 NC_003278.1 + 13194 0.7 0.109566
Target:  5'- gACGGCcgaGGCAUCGCCGacgcgaccgucggcGGCGCGgGCGUGg -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--------------CCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 13898 0.66 0.248262
Target:  5'- uCAGCGaGCcgacgggcucgACCACgC-GGCGCAGgGCGc -3'
miRNA:   3'- uGUCGC-CG-----------UGGUG-GuCCGCGUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 14131 0.74 0.057424
Target:  5'- uACGGCGGCcuGCuCACCGacaucGGCGCGGCaGCGc -3'
miRNA:   3'- -UGUCGCCG--UG-GUGGU-----CCGCGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 15589 0.69 0.145782
Target:  5'- gUAGCGGCcaGCCACUGGGC-CAuucGCGUGa -3'
miRNA:   3'- uGUCGCCG--UGGUGGUCCGcGU---CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 15790 0.71 0.096003
Target:  5'- cCAGCu-CGCCAUCGGGCGCGuGUGCGa -3'
miRNA:   3'- uGUCGccGUGGUGGUCCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 15984 0.68 0.164364
Target:  5'- gUAGCGGCAgCGCCAguacagaccgccggcGGCGUAGC-Ca -3'
miRNA:   3'- uGUCGCCGUgGUGGU---------------CCGCGUCGcGc -5'
11939 3' -62.8 NC_003278.1 + 16715 0.66 0.218071
Target:  5'- uCAGCacugaGCAgUACCAGGCGCugcaGGCGUa -3'
miRNA:   3'- uGUCGc----CGUgGUGGUCCGCG----UCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.