Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11939 | 3' | -62.8 | NC_003278.1 | + | 22880 | 0.72 | 0.078715 |
Target: 5'- uCGGCaGGC-CCGCCAGcGC-CGGCGCGa -3' miRNA: 3'- uGUCG-CCGuGGUGGUC-CGcGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 22963 | 0.66 | 0.232152 |
Target: 5'- cACGGUGGcCACCGcaucgaaguccucgcCCAGGCGUgucagcagguuGGCGuCGg -3' miRNA: 3'- -UGUCGCC-GUGGU---------------GGUCCGCG-----------UCGC-GC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23031 | 0.67 | 0.201504 |
Target: 5'- --uGCGGCAgCGCCAGGCcgcugGCAGUcuuGCc -3' miRNA: 3'- uguCGCCGUgGUGGUCCG-----CGUCG---CGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23087 | 0.69 | 0.141834 |
Target: 5'- --cGCGGUcgGCCugCAGGUaGCGGUGCu -3' miRNA: 3'- uguCGCCG--UGGugGUCCG-CGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23160 | 0.72 | 0.080989 |
Target: 5'- uACAGCG--ACCGCCAGaGCGCccuGCGCGc -3' miRNA: 3'- -UGUCGCcgUGGUGGUC-CGCGu--CGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23208 | 0.66 | 0.223848 |
Target: 5'- -uGGCGGUcgCugUAGGUGUGGCGCa -3' miRNA: 3'- ugUCGCCGugGugGUCCGCGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23247 | 0.71 | 0.090727 |
Target: 5'- -aGGCGGUuCCACUcGGCGCgggcGGCGCGc -3' miRNA: 3'- ugUCGCCGuGGUGGuCCGCG----UCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 26565 | 0.67 | 0.212423 |
Target: 5'- --cGCGGC---GCCAGGUGguCAGCGCGa -3' miRNA: 3'- uguCGCCGuggUGGUCCGC--GUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 26663 | 0.71 | 0.093329 |
Target: 5'- gGCGGCGGCGcauucgcguCCGCCAGG-GUAgGCGCc -3' miRNA: 3'- -UGUCGCCGU---------GGUGGUCCgCGU-CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 26829 | 0.72 | 0.088193 |
Target: 5'- cCAGgGGCgucgccaccGCCAUCAGGCGCGGUGa- -3' miRNA: 3'- uGUCgCCG---------UGGUGGUCCGCGUCGCgc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 26867 | 0.66 | 0.223848 |
Target: 5'- gACcGCauCAUCGCCgAGGCGCuGCGCGa -3' miRNA: 3'- -UGuCGccGUGGUGG-UCCGCGuCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 27170 | 0.67 | 0.186041 |
Target: 5'- -aGGUGGCGCCG-CAGaGCGCGuuugugcauuGCGCGu -3' miRNA: 3'- ugUCGCCGUGGUgGUC-CGCGU----------CGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 28093 | 0.66 | 0.223848 |
Target: 5'- gACAGCcccuGGUucauCCGCUgcGGGCGCGGCaaguGCGg -3' miRNA: 3'- -UGUCG----CCGu---GGUGG--UCCGCGUCG----CGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 28493 | 0.75 | 0.049701 |
Target: 5'- -gGGUgGGCACCACCAGaCGCcGCGCGg -3' miRNA: 3'- ugUCG-CCGUGGUGGUCcGCGuCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 28914 | 0.71 | 0.096003 |
Target: 5'- uCGGCGGCACUcUCGGcGaucaGCAGCGCGc -3' miRNA: 3'- uGUCGCCGUGGuGGUC-Cg---CGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 29881 | 0.79 | 0.021952 |
Target: 5'- -uGGCGGCGCCGCC-GGCGCGGCuguugucgcuGCGg -3' miRNA: 3'- ugUCGCCGUGGUGGuCCGCGUCG----------CGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 30317 | 1.07 | 0.000123 |
Target: 5'- gACAGCGGCACCACCAGGCGCAGCGCGu -3' miRNA: 3'- -UGUCGCCGUGGUGGUCCGCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 31135 | 0.71 | 0.101569 |
Target: 5'- cCAGCGGaCAaacacCCGCCuGGCGCccAGCGCc -3' miRNA: 3'- uGUCGCC-GU-----GGUGGuCCGCG--UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 31191 | 0.66 | 0.223848 |
Target: 5'- aGCAGauacccgaGGCccGCCGCCAGGCuGCuccgGGCuGCGa -3' miRNA: 3'- -UGUCg-------CCG--UGGUGGUCCG-CG----UCG-CGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 31222 | 0.67 | 0.186041 |
Target: 5'- cGCAGUccucGCACCAgaGGGCGCugGGCGCc -3' miRNA: 3'- -UGUCGc---CGUGGUggUCCGCG--UCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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