miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 26867 0.66 0.223848
Target:  5'- gACcGCauCAUCGCCgAGGCGCuGCGCGa -3'
miRNA:   3'- -UGuCGccGUGGUGG-UCCGCGuCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 26829 0.72 0.088193
Target:  5'- cCAGgGGCgucgccaccGCCAUCAGGCGCGGUGa- -3'
miRNA:   3'- uGUCgCCG---------UGGUGGUCCGCGUCGCgc -5'
11939 3' -62.8 NC_003278.1 + 26663 0.71 0.093329
Target:  5'- gGCGGCGGCGcauucgcguCCGCCAGG-GUAgGCGCc -3'
miRNA:   3'- -UGUCGCCGU---------GGUGGUCCgCGU-CGCGc -5'
11939 3' -62.8 NC_003278.1 + 26565 0.67 0.212423
Target:  5'- --cGCGGC---GCCAGGUGguCAGCGCGa -3'
miRNA:   3'- uguCGCCGuggUGGUCCGC--GUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 23247 0.71 0.090727
Target:  5'- -aGGCGGUuCCACUcGGCGCgggcGGCGCGc -3'
miRNA:   3'- ugUCGCCGuGGUGGuCCGCG----UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 23208 0.66 0.223848
Target:  5'- -uGGCGGUcgCugUAGGUGUGGCGCa -3'
miRNA:   3'- ugUCGCCGugGugGUCCGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 23160 0.72 0.080989
Target:  5'- uACAGCG--ACCGCCAGaGCGCccuGCGCGc -3'
miRNA:   3'- -UGUCGCcgUGGUGGUC-CGCGu--CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 23087 0.69 0.141834
Target:  5'- --cGCGGUcgGCCugCAGGUaGCGGUGCu -3'
miRNA:   3'- uguCGCCG--UGGugGUCCG-CGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 23031 0.67 0.201504
Target:  5'- --uGCGGCAgCGCCAGGCcgcugGCAGUcuuGCc -3'
miRNA:   3'- uguCGCCGUgGUGGUCCG-----CGUCG---CGc -5'
11939 3' -62.8 NC_003278.1 + 22963 0.66 0.232152
Target:  5'- cACGGUGGcCACCGcaucgaaguccucgcCCAGGCGUgucagcagguuGGCGuCGg -3'
miRNA:   3'- -UGUCGCC-GUGGU---------------GGUCCGCG-----------UCGC-GC- -5'
11939 3' -62.8 NC_003278.1 + 22880 0.72 0.078715
Target:  5'- uCGGCaGGC-CCGCCAGcGC-CGGCGCGa -3'
miRNA:   3'- uGUCG-CCGuGGUGGUC-CGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 22471 0.66 0.229753
Target:  5'- aACAcCGGCACCggauaGCC-GGCGUcGCGCu -3'
miRNA:   3'- -UGUcGCCGUGG-----UGGuCCGCGuCGCGc -5'
11939 3' -62.8 NC_003278.1 + 22385 0.67 0.196229
Target:  5'- cCAGCGcCGuCgACCAGuuGCAGCGCGa -3'
miRNA:   3'- uGUCGCcGU-GgUGGUCcgCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 22065 0.67 0.186041
Target:  5'- cCGGCGuGCuGCUGCCGGaGCuggccgGCAGCGCGu -3'
miRNA:   3'- uGUCGC-CG-UGGUGGUC-CG------CGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21758 0.75 0.047451
Target:  5'- uCGGCGGCgacacuuacuacaucACCAuCCAGGC-CGGCGCGg -3'
miRNA:   3'- uGUCGCCG---------------UGGU-GGUCCGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21710 0.67 0.206901
Target:  5'- cCAG-GGCACCGau-GGCGCcGGCGCu -3'
miRNA:   3'- uGUCgCCGUGGUgguCCGCG-UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 21652 0.69 0.136849
Target:  5'- aGCGcCGGCGCCAUCGgugcccuggugcucGGCGCcAGCGCc -3'
miRNA:   3'- -UGUcGCCGUGGUGGU--------------CCGCG-UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 21469 0.66 0.218071
Target:  5'- gGCcuCGGCGCCgGCCAGGCcgGCccgcugGGCGUGa -3'
miRNA:   3'- -UGucGCCGUGG-UGGUCCG--CG------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21413 0.73 0.070217
Target:  5'- --cGCGGCGCCGCCGacGCGCuggacGGCGCGc -3'
miRNA:   3'- uguCGCCGUGGUGGUc-CGCG-----UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21098 0.73 0.066115
Target:  5'- gACGGCGGCaauugccaggACCACCGGGUugGCggccaggccccacAGCGCGa -3'
miRNA:   3'- -UGUCGCCG----------UGGUGGUCCG--CG-------------UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.