miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 19970 0.67 0.191075
Target:  5'- gACAGCGGCagggugcggGCCugUuGcCGCAGCGCc -3'
miRNA:   3'- -UGUCGCCG---------UGGugGuCcGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 19812 0.67 0.191075
Target:  5'- --cGCGcGUGCCGCCAugccggugccGGC-CAGCGCGg -3'
miRNA:   3'- uguCGC-CGUGGUGGU----------CCGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19750 0.69 0.130573
Target:  5'- -uGGcCGGCACCGgCAuGGCGgCAcGCGCGa -3'
miRNA:   3'- ugUC-GCCGUGGUgGU-CCGC-GU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19631 0.84 0.009589
Target:  5'- gGCGGCcaauGGCGCCaucaacaGCCAGGCGCAGCGCu -3'
miRNA:   3'- -UGUCG----CCGUGG-------UGGUCCGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 19614 0.66 0.23579
Target:  5'- -gAGcCGGCGuuGCUgAGGCGCGuGCGCa -3'
miRNA:   3'- ugUC-GCCGUggUGG-UCCGCGU-CGCGc -5'
11939 3' -62.8 NC_003278.1 + 19412 0.68 0.158231
Target:  5'- cCAG-GGCGCCgcGCUGGGUGCggaaGGCGCGc -3'
miRNA:   3'- uGUCgCCGUGG--UGGUCCGCG----UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19226 0.66 0.229753
Target:  5'- uCGGCGGaacuCCGuacCCGGGCGCGuucGCGCc -3'
miRNA:   3'- uGUCGCCgu--GGU---GGUCCGCGU---CGCGc -5'
11939 3' -62.8 NC_003278.1 + 18220 0.69 0.134232
Target:  5'- gACGGCGGUAgCUACCAGG-GCGuCGUGa -3'
miRNA:   3'- -UGUCGCCGU-GGUGGUCCgCGUcGCGC- -5'
11939 3' -62.8 NC_003278.1 + 18083 0.72 0.085726
Target:  5'- aGCGGCGGCACCG--GGGUGUAGuCGUa -3'
miRNA:   3'- -UGUCGCCGUGGUggUCCGCGUC-GCGc -5'
11939 3' -62.8 NC_003278.1 + 17091 0.68 0.171634
Target:  5'- uCGGCGGUgGCUACCAGGCcgaugaucGCGGUgGCGa -3'
miRNA:   3'- uGUCGCCG-UGGUGGUCCG--------CGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 16969 0.67 0.201504
Target:  5'- uGCAGUGGUuggaugacACUGCaCAGGCuGCcGCGCGc -3'
miRNA:   3'- -UGUCGCCG--------UGGUG-GUCCG-CGuCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 16715 0.66 0.218071
Target:  5'- uCAGCacugaGCAgUACCAGGCGCugcaGGCGUa -3'
miRNA:   3'- uGUCGc----CGUgGUGGUCCGCG----UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 15984 0.68 0.164364
Target:  5'- gUAGCGGCAgCGCCAguacagaccgccggcGGCGUAGC-Ca -3'
miRNA:   3'- uGUCGCCGUgGUGGU---------------CCGCGUCGcGc -5'
11939 3' -62.8 NC_003278.1 + 15790 0.71 0.096003
Target:  5'- cCAGCu-CGCCAUCGGGCGCGuGUGCGa -3'
miRNA:   3'- uGUCGccGUGGUGGUCCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 15589 0.69 0.145782
Target:  5'- gUAGCGGCcaGCCACUGGGC-CAuucGCGUGa -3'
miRNA:   3'- uGUCGCCG--UGGUGGUCCGcGU---CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 14131 0.74 0.057424
Target:  5'- uACGGCGGCcuGCuCACCGacaucGGCGCGGCaGCGc -3'
miRNA:   3'- -UGUCGCCG--UG-GUGGU-----CCGCGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 13898 0.66 0.248262
Target:  5'- uCAGCGaGCcgacgggcucgACCACgC-GGCGCAGgGCGc -3'
miRNA:   3'- uGUCGC-CG-----------UGGUG-GuCCGCGUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 13194 0.7 0.109566
Target:  5'- gACGGCcgaGGCAUCGCCGacgcgaccgucggcGGCGCGgGCGUGg -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--------------CCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 12281 0.7 0.11684
Target:  5'- cACGGCGGCGucaUACCGGGCG--GCGCu -3'
miRNA:   3'- -UGUCGCCGUg--GUGGUCCGCguCGCGc -5'
11939 3' -62.8 NC_003278.1 + 12170 0.7 0.126654
Target:  5'- uCGGUGGUACCGCCGGcgggaagaacugcGCGCAG-GUGg -3'
miRNA:   3'- uGUCGCCGUGGUGGUC-------------CGCGUCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.