Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11939 | 3' | -62.8 | NC_003278.1 | + | 12083 | 0.67 | 0.196229 |
Target: 5'- gACAGCGcagccCACCACCuGcGCGCAGUucuucccgccgGCGg -3' miRNA: 3'- -UGUCGCc----GUGGUGGuC-CGCGUCG-----------CGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 11819 | 0.7 | 0.127006 |
Target: 5'- cGCGGUGG-ACCAUgccGCGCAGCGCGu -3' miRNA: 3'- -UGUCGCCgUGGUGgucCGCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 10429 | 0.67 | 0.181123 |
Target: 5'- uCGGCGGCGuCCACUcGGCcaGCAGCuCGc -3' miRNA: 3'- uGUCGCCGU-GGUGGuCCG--CGUCGcGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9674 | 0.69 | 0.145782 |
Target: 5'- cGCGGaUGGcCAgCGCCuGGCGCAGCuGCu -3' miRNA: 3'- -UGUC-GCC-GUgGUGGuCCGCGUCG-CGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9608 | 0.77 | 0.036105 |
Target: 5'- gGCAGCaGCugCGCCAGGCGCuGGCcauccGCGa -3' miRNA: 3'- -UGUCGcCGugGUGGUCCGCG-UCG-----CGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9450 | 0.69 | 0.145382 |
Target: 5'- -gGGCGGCGCuguacaaCACCuGGCGCAGaaggcucaCGCGc -3' miRNA: 3'- ugUCGCCGUG-------GUGGuCCGCGUC--------GCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9449 | 0.67 | 0.201504 |
Target: 5'- aGCAGCaGCGCaucgACCuGGCGCAG-GCc -3' miRNA: 3'- -UGUCGcCGUGg---UGGuCCGCGUCgCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9153 | 0.66 | 0.246357 |
Target: 5'- uCAGCGuGCAggccuucgccgaguCCAUgGGGCGUAGCGa- -3' miRNA: 3'- uGUCGC-CGU--------------GGUGgUCCGCGUCGCgc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9123 | 0.66 | 0.217501 |
Target: 5'- gGCGGCGGUaucgucgaucugGCgagcguuCGCCAGGCGCuGGUGCn -3' miRNA: 3'- -UGUCGCCG------------UG-------GUGGUCCGCG-UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9077 | 0.74 | 0.057259 |
Target: 5'- uCGGCGGUGCCGCCggcauagccgcccGGGCGaggguucacCAGCGCGg -3' miRNA: 3'- uGUCGCCGUGGUGG-------------UCCGC---------GUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9027 | 0.75 | 0.04426 |
Target: 5'- cCGGCGGCACCGCCGaGCacCAGCGCc -3' miRNA: 3'- uGUCGCCGUGGUGGUcCGc-GUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 8664 | 0.75 | 0.05116 |
Target: 5'- gACGGCcacuucGGCGCCGCCaccgAGGaCGCGGUGCGu -3' miRNA: 3'- -UGUCG------CCGUGGUGG----UCC-GCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 8424 | 0.82 | 0.01454 |
Target: 5'- cGCAGCgcuGGUAgCagACCAGGCGCAGCGCGg -3' miRNA: 3'- -UGUCG---CCGUgG--UGGUCCGCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 8148 | 0.66 | 0.218071 |
Target: 5'- gACAGCaGGCGCgACCAGGCcuucagguccuGCuucGUGCc -3' miRNA: 3'- -UGUCG-CCGUGgUGGUCCG-----------CGu--CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 8109 | 0.66 | 0.248262 |
Target: 5'- cCGGUGGC-CaGCCAGGCGCcgagcAGgGCa -3' miRNA: 3'- uGUCGCCGuGgUGGUCCGCG-----UCgCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 7827 | 0.66 | 0.223848 |
Target: 5'- cCGGCGGUgcgaccguaguGCCGCCA-GCaCAGCGCc -3' miRNA: 3'- uGUCGCCG-----------UGGUGGUcCGcGUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 7035 | 0.68 | 0.167057 |
Target: 5'- gGCAGauCGGCcCCgaGCC-GGCGgGGCGCGg -3' miRNA: 3'- -UGUC--GCCGuGG--UGGuCCGCgUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 6361 | 0.67 | 0.196229 |
Target: 5'- gGCAGUGGcCGCCGCCucuugagcGGCGguCAcGCGCa -3' miRNA: 3'- -UGUCGCC-GUGGUGGu-------CCGC--GU-CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 6311 | 0.69 | 0.134232 |
Target: 5'- gGCGGCGGCcacuGCCccgcACCAGG-GCauggaaGGCGCGa -3' miRNA: 3'- -UGUCGCCG----UGG----UGGUCCgCG------UCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 5967 | 0.69 | 0.137985 |
Target: 5'- --cGCGGCcgaggaucACCACCAGGCccgggucacgGCGGUGCc -3' miRNA: 3'- uguCGCCG--------UGGUGGUCCG----------CGUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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