miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 10429 0.67 0.181123
Target:  5'- uCGGCGGCGuCCACUcGGCcaGCAGCuCGc -3'
miRNA:   3'- uGUCGCCGU-GGUGGuCCG--CGUCGcGC- -5'
11939 3' -62.8 NC_003278.1 + 31222 0.67 0.186041
Target:  5'- cGCAGUccucGCACCAgaGGGCGCugGGCGCc -3'
miRNA:   3'- -UGUCGc---CGUGGUggUCCGCG--UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 16969 0.67 0.201504
Target:  5'- uGCAGUGGUuggaugacACUGCaCAGGCuGCcGCGCGc -3'
miRNA:   3'- -UGUCGCCG--------UGGUG-GUCCG-CGuCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 23208 0.66 0.223848
Target:  5'- -uGGCGGUcgCugUAGGUGUGGCGCa -3'
miRNA:   3'- ugUCGCCGugGugGUCCGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 23087 0.69 0.141834
Target:  5'- --cGCGGUcgGCCugCAGGUaGCGGUGCu -3'
miRNA:   3'- uguCGCCG--UGGugGUCCG-CGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 7035 0.68 0.167057
Target:  5'- gGCAGauCGGCcCCgaGCC-GGCGgGGCGCGg -3'
miRNA:   3'- -UGUC--GCCGuGG--UGGuCCGCgUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19970 0.67 0.191075
Target:  5'- gACAGCGGCagggugcggGCCugUuGcCGCAGCGCc -3'
miRNA:   3'- -UGUCGCCG---------UGGugGuCcGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 7827 0.66 0.223848
Target:  5'- cCGGCGGUgcgaccguaguGCCGCCA-GCaCAGCGCc -3'
miRNA:   3'- uGUCGCCG-----------UGGUGGUcCGcGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 4305 0.68 0.167057
Target:  5'- -gGGCGGCGCUACUgagGGGCG-AGgGUGg -3'
miRNA:   3'- ugUCGCCGUGGUGG---UCCGCgUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 19226 0.66 0.229753
Target:  5'- uCGGCGGaacuCCGuacCCGGGCGCGuucGCGCc -3'
miRNA:   3'- uGUCGCCgu--GGU---GGUCCGCGU---CGCGc -5'
11939 3' -62.8 NC_003278.1 + 27170 0.67 0.186041
Target:  5'- -aGGUGGCGCCG-CAGaGCGCGuuugugcauuGCGCGu -3'
miRNA:   3'- ugUCGCCGUGGUgGUC-CGCGU----------CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 4004 0.67 0.181123
Target:  5'- uGCAuCGGCAgCuugagcGCCAGGCGCGGauccaGCGc -3'
miRNA:   3'- -UGUcGCCGUgG------UGGUCCGCGUCg----CGC- -5'
11939 3' -62.8 NC_003278.1 + 19812 0.67 0.191075
Target:  5'- --cGCGcGUGCCGCCAugccggugccGGC-CAGCGCGg -3'
miRNA:   3'- uguCGC-CGUGGUGGU----------CCGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 6361 0.67 0.196229
Target:  5'- gGCAGUGGcCGCCGCCucuugagcGGCGguCAcGCGCa -3'
miRNA:   3'- -UGUCGCC-GUGGUGGu-------CCGC--GU-CGCGc -5'
11939 3' -62.8 NC_003278.1 + 21710 0.67 0.206901
Target:  5'- cCAG-GGCACCGau-GGCGCcGGCGCu -3'
miRNA:   3'- uGUCgCCGUGGUgguCCGCG-UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 8148 0.66 0.218071
Target:  5'- gACAGCaGGCGCgACCAGGCcuucagguccuGCuucGUGCc -3'
miRNA:   3'- -UGUCG-CCGUGgUGGUCCG-----------CGu--CGCGc -5'
11939 3' -62.8 NC_003278.1 + 13194 0.7 0.109566
Target:  5'- gACGGCcgaGGCAUCGCCGacgcgaccgucggcGGCGCGgGCGUGg -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--------------CCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 5967 0.69 0.137985
Target:  5'- --cGCGGCcgaggaucACCACCAGGCccgggucacgGCGGUGCc -3'
miRNA:   3'- uguCGCCG--------UGGUGGUCCG----------CGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 9674 0.69 0.145782
Target:  5'- cGCGGaUGGcCAgCGCCuGGCGCAGCuGCu -3'
miRNA:   3'- -UGUC-GCC-GUgGUGGuCCGCGUCG-CGc -5'
11939 3' -62.8 NC_003278.1 + 31807 0.68 0.167057
Target:  5'- aGCAG-GGUGCCcgggacaccgGCCAGGCGCucgaAGuCGCGg -3'
miRNA:   3'- -UGUCgCCGUGG----------UGGUCCGCG----UC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.