miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 31679 0.71 0.098749
Target:  5'- --uGCGGCGCCGCCgcccAGGCcGCAGCa-- -3'
miRNA:   3'- uguCGCCGUGGUGG----UCCG-CGUCGcgc -5'
11939 3' -62.8 NC_003278.1 + 31807 0.68 0.167057
Target:  5'- aGCAG-GGUGCCcgggacaccgGCCAGGCGCucgaAGuCGCGg -3'
miRNA:   3'- -UGUCgCCGUGG----------UGGUCCGCG----UC-GCGC- -5'
11939 3' -62.8 NC_003278.1 + 22880 0.72 0.078715
Target:  5'- uCGGCaGGC-CCGCCAGcGC-CGGCGCGa -3'
miRNA:   3'- uGUCG-CCGuGGUGGUC-CGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 7035 0.68 0.167057
Target:  5'- gGCAGauCGGCcCCgaGCC-GGCGgGGCGCGg -3'
miRNA:   3'- -UGUC--GCCGuGG--UGGuCCGCgUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19412 0.68 0.158231
Target:  5'- cCAG-GGCGCCgcGCUGGGUGCggaaGGCGCGc -3'
miRNA:   3'- uGUCgCCGUGG--UGGUCCGCG----UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 9450 0.69 0.145382
Target:  5'- -gGGCGGCGCuguacaaCACCuGGCGCAGaaggcucaCGCGc -3'
miRNA:   3'- ugUCGCCGUG-------GUGGuCCGCGUC--------GCGC- -5'
11939 3' -62.8 NC_003278.1 + 28493 0.75 0.049701
Target:  5'- -gGGUgGGCACCACCAGaCGCcGCGCGg -3'
miRNA:   3'- ugUCG-CCGUGGUGGUCcGCGuCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 34572 0.74 0.057424
Target:  5'- -aGGUGGCcauGCCACCAGccguuGCGCAGCGUa -3'
miRNA:   3'- ugUCGCCG---UGGUGGUC-----CGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 21098 0.73 0.066115
Target:  5'- gACGGCGGCaauugccaggACCACCGGGUugGCggccaggccccacAGCGCGa -3'
miRNA:   3'- -UGUCGCCG----------UGGUGGUCCG--CG-------------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 31920 0.72 0.080989
Target:  5'- cCGGuCGGCGcCCGCCGgcGGCGCGGCGg- -3'
miRNA:   3'- uGUC-GCCGU-GGUGGU--CCGCGUCGCgc -5'
11939 3' -62.8 NC_003278.1 + 18083 0.72 0.085726
Target:  5'- aGCGGCGGCACCG--GGGUGUAGuCGUa -3'
miRNA:   3'- -UGUCGCCGUGGUggUCCGCGUC-GCGc -5'
11939 3' -62.8 NC_003278.1 + 26663 0.71 0.093329
Target:  5'- gGCGGCGGCGcauucgcguCCGCCAGG-GUAgGCGCc -3'
miRNA:   3'- -UGUCGCCGU---------GGUGGUCCgCGU-CGCGc -5'
11939 3' -62.8 NC_003278.1 + 28914 0.71 0.096003
Target:  5'- uCGGCGGCACUcUCGGcGaucaGCAGCGCGc -3'
miRNA:   3'- uGUCGCCGUGGuGGUC-Cg---CGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 13194 0.7 0.109566
Target:  5'- gACGGCcgaGGCAUCGCCGacgcgaccgucggcGGCGCGgGCGUGg -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--------------CCGCGU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 12170 0.7 0.126654
Target:  5'- uCGGUGGUACCGCCGGcgggaagaacugcGCGCAG-GUGg -3'
miRNA:   3'- uGUCGCCGUGGUGGUC-------------CGCGUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 29881 0.79 0.021952
Target:  5'- -uGGCGGCGCCGCC-GGCGCGGCuguugucgcuGCGg -3'
miRNA:   3'- ugUCGCCGUGGUGGuCCGCGUCG----------CGC- -5'
11939 3' -62.8 NC_003278.1 + 9449 0.67 0.201504
Target:  5'- aGCAGCaGCGCaucgACCuGGCGCAG-GCc -3'
miRNA:   3'- -UGUCGcCGUGg---UGGuCCGCGUCgCGc -5'
11939 3' -62.8 NC_003278.1 + 26565 0.67 0.212423
Target:  5'- --cGCGGC---GCCAGGUGguCAGCGCGa -3'
miRNA:   3'- uguCGCCGuggUGGUCCGC--GUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21469 0.66 0.218071
Target:  5'- gGCcuCGGCGCCgGCCAGGCcgGCccgcugGGCGUGa -3'
miRNA:   3'- -UGucGCCGUGG-UGGUCCG--CG------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 18220 0.69 0.134232
Target:  5'- gACGGCGGUAgCUACCAGG-GCGuCGUGa -3'
miRNA:   3'- -UGUCGCCGU-GGUGGUCCgCGUcGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.