miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 14131 0.74 0.057424
Target:  5'- uACGGCGGCcuGCuCACCGacaucGGCGCGGCaGCGc -3'
miRNA:   3'- -UGUCGCCG--UG-GUGGU-----CCGCGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 8664 0.75 0.05116
Target:  5'- gACGGCcacuucGGCGCCGCCaccgAGGaCGCGGUGCGu -3'
miRNA:   3'- -UGUCG------CCGUGGUGG----UCC-GCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21758 0.75 0.047451
Target:  5'- uCGGCGGCgacacuuacuacaucACCAuCCAGGC-CGGCGCGg -3'
miRNA:   3'- uGUCGCCG---------------UGGU-GGUCCGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 9608 0.77 0.036105
Target:  5'- gGCAGCaGCugCGCCAGGCGCuGGCcauccGCGa -3'
miRNA:   3'- -UGUCGcCGugGUGGUCCGCG-UCG-----CGC- -5'
11939 3' -62.8 NC_003278.1 + 32491 0.7 0.11684
Target:  5'- gACAGCacgGGCACCAUCGccGGuCGCAGCaGCc -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--CC-GCGUCG-CGc -5'
11939 3' -62.8 NC_003278.1 + 19750 0.69 0.130573
Target:  5'- -uGGcCGGCACCGgCAuGGCGgCAcGCGCGa -3'
miRNA:   3'- ugUC-GCCGUGGUgGU-CCGC-GU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 18220 0.69 0.134232
Target:  5'- gACGGCGGUAgCUACCAGG-GCGuCGUGa -3'
miRNA:   3'- -UGUCGCCGU-GGUGGUCCgCGUcGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21469 0.66 0.218071
Target:  5'- gGCcuCGGCGCCgGCCAGGCcgGCccgcugGGCGUGa -3'
miRNA:   3'- -UGucGCCGUGG-UGGUCCG--CG------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 26565 0.67 0.212423
Target:  5'- --cGCGGC---GCCAGGUGguCAGCGCGa -3'
miRNA:   3'- uguCGCCGuggUGGUCCGC--GUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 9449 0.67 0.201504
Target:  5'- aGCAGCaGCGCaucgACCuGGCGCAG-GCc -3'
miRNA:   3'- -UGUCGcCGUGg---UGGuCCGCGUCgCGc -5'
11939 3' -62.8 NC_003278.1 + 5445 0.67 0.201504
Target:  5'- uCAGCGGCACCaucGCCAGcCGUaccgauaccacuGGCGaCGg -3'
miRNA:   3'- uGUCGCCGUGG---UGGUCcGCG------------UCGC-GC- -5'
11939 3' -62.8 NC_003278.1 + 22385 0.67 0.196229
Target:  5'- cCAGCGcCGuCgACCAGuuGCAGCGCGa -3'
miRNA:   3'- uGUCGCcGU-GgUGGUCcgCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 12083 0.67 0.196229
Target:  5'- gACAGCGcagccCACCACCuGcGCGCAGUucuucccgccgGCGg -3'
miRNA:   3'- -UGUCGCc----GUGGUGGuC-CGCGUCG-----------CGC- -5'
11939 3' -62.8 NC_003278.1 + 5149 0.67 0.191075
Target:  5'- aGCAGCGGCccccggUCACCGguGGCGgCAGUGUc -3'
miRNA:   3'- -UGUCGCCGu-----GGUGGU--CCGC-GUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 22065 0.67 0.186041
Target:  5'- cCGGCGuGCuGCUGCCGGaGCuggccgGCAGCGCGu -3'
miRNA:   3'- uGUCGC-CG-UGGUGGUC-CG------CGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 545 0.67 0.181123
Target:  5'- gACGGCGGUAgCACCcuguuGGgGCAGUaCGa -3'
miRNA:   3'- -UGUCGCCGUgGUGGu----CCgCGUCGcGC- -5'
11939 3' -62.8 NC_003278.1 + 2993 0.68 0.157801
Target:  5'- cCAGCcacaccuGGCgAUCACCGaacGGcCGCAGCGCGa -3'
miRNA:   3'- uGUCG-------CCG-UGGUGGU---CC-GCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 32590 0.69 0.149011
Target:  5'- uACGGCGuGCGCCGCUggaccgacaccucGGGCGCcaucaucGGCGUc -3'
miRNA:   3'- -UGUCGC-CGUGGUGG-------------UCCGCG-------UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 1752 0.69 0.141834
Target:  5'- --cGCGGUcuucAgCGCCGuGCGCAGCGCGu -3'
miRNA:   3'- uguCGCCG----UgGUGGUcCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21652 0.69 0.136849
Target:  5'- aGCGcCGGCGCCAUCGgugcccuggugcucGGCGCcAGCGCc -3'
miRNA:   3'- -UGUcGCCGUGGUGGU--------------CCGCG-UCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.