miRNA display CGI


Results 81 - 91 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 9449 0.67 0.201504
Target:  5'- aGCAGCaGCGCaucgACCuGGCGCAG-GCc -3'
miRNA:   3'- -UGUCGcCGUGg---UGGuCCGCGUCgCGc -5'
11939 3' -62.8 NC_003278.1 + 5445 0.67 0.201504
Target:  5'- uCAGCGGCACCaucGCCAGcCGUaccgauaccacuGGCGaCGg -3'
miRNA:   3'- uGUCGCCGUGG---UGGUCcGCG------------UCGC-GC- -5'
11939 3' -62.8 NC_003278.1 + 22385 0.67 0.196229
Target:  5'- cCAGCGcCGuCgACCAGuuGCAGCGCGa -3'
miRNA:   3'- uGUCGCcGU-GgUGGUCcgCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 12083 0.67 0.196229
Target:  5'- gACAGCGcagccCACCACCuGcGCGCAGUucuucccgccgGCGg -3'
miRNA:   3'- -UGUCGCc----GUGGUGGuC-CGCGUCG-----------CGC- -5'
11939 3' -62.8 NC_003278.1 + 5149 0.67 0.191075
Target:  5'- aGCAGCGGCccccggUCACCGguGGCGgCAGUGUc -3'
miRNA:   3'- -UGUCGCCGu-----GGUGGU--CCGC-GUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 22065 0.67 0.186041
Target:  5'- cCGGCGuGCuGCUGCCGGaGCuggccgGCAGCGCGu -3'
miRNA:   3'- uGUCGC-CG-UGGUGGUC-CG------CGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 545 0.67 0.181123
Target:  5'- gACGGCGGUAgCACCcuguuGGgGCAGUaCGa -3'
miRNA:   3'- -UGUCGCCGUgGUGGu----CCgCGUCGcGC- -5'
11939 3' -62.8 NC_003278.1 + 2993 0.68 0.157801
Target:  5'- cCAGCcacaccuGGCgAUCACCGaacGGcCGCAGCGCGa -3'
miRNA:   3'- uGUCG-------CCG-UGGUGGU---CC-GCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 32590 0.69 0.149011
Target:  5'- uACGGCGuGCGCCGCUggaccgacaccucGGGCGCcaucaucGGCGUc -3'
miRNA:   3'- -UGUCGC-CGUGGUGG-------------UCCGCG-------UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 1752 0.69 0.141834
Target:  5'- --cGCGGUcuucAgCGCCGuGCGCAGCGCGu -3'
miRNA:   3'- uguCGCCG----UgGUGGUcCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 28093 0.66 0.223848
Target:  5'- gACAGCcccuGGUucauCCGCUgcGGGCGCGGCaaguGCGg -3'
miRNA:   3'- -UGUCG----CCGu---GGUGG--UCCGCGUCG----CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.