miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 21710 0.67 0.206901
Target:  5'- cCAG-GGCACCGau-GGCGCcGGCGCu -3'
miRNA:   3'- uGUCgCCGUGGUgguCCGCG-UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 32073 0.67 0.20311
Target:  5'- uCAGCGGCACCgggucaucagcccauGCCucGCccaucagccagauGCAGCGCa -3'
miRNA:   3'- uGUCGCCGUGG---------------UGGucCG-------------CGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 23031 0.67 0.201504
Target:  5'- --uGCGGCAgCGCCAGGCcgcugGCAGUcuuGCc -3'
miRNA:   3'- uguCGCCGUgGUGGUCCG-----CGUCG---CGc -5'
11939 3' -62.8 NC_003278.1 + 16969 0.67 0.201504
Target:  5'- uGCAGUGGUuggaugacACUGCaCAGGCuGCcGCGCGc -3'
miRNA:   3'- -UGUCGCCG--------UGGUG-GUCCG-CGuCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 9449 0.67 0.201504
Target:  5'- aGCAGCaGCGCaucgACCuGGCGCAG-GCc -3'
miRNA:   3'- -UGUCGcCGUGg---UGGuCCGCGUCgCGc -5'
11939 3' -62.8 NC_003278.1 + 5445 0.67 0.201504
Target:  5'- uCAGCGGCACCaucGCCAGcCGUaccgauaccacuGGCGaCGg -3'
miRNA:   3'- uGUCGCCGUGG---UGGUCcGCG------------UCGC-GC- -5'
11939 3' -62.8 NC_003278.1 + 22385 0.67 0.196229
Target:  5'- cCAGCGcCGuCgACCAGuuGCAGCGCGa -3'
miRNA:   3'- uGUCGCcGU-GgUGGUCcgCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 12083 0.67 0.196229
Target:  5'- gACAGCGcagccCACCACCuGcGCGCAGUucuucccgccgGCGg -3'
miRNA:   3'- -UGUCGCc----GUGGUGGuC-CGCGUCG-----------CGC- -5'
11939 3' -62.8 NC_003278.1 + 6361 0.67 0.196229
Target:  5'- gGCAGUGGcCGCCGCCucuugagcGGCGguCAcGCGCa -3'
miRNA:   3'- -UGUCGCC-GUGGUGGu-------CCGC--GU-CGCGc -5'
11939 3' -62.8 NC_003278.1 + 19812 0.67 0.191075
Target:  5'- --cGCGcGUGCCGCCAugccggugccGGC-CAGCGCGg -3'
miRNA:   3'- uguCGC-CGUGGUGGU----------CCGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19970 0.67 0.191075
Target:  5'- gACAGCGGCagggugcggGCCugUuGcCGCAGCGCc -3'
miRNA:   3'- -UGUCGCCG---------UGGugGuCcGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 5149 0.67 0.191075
Target:  5'- aGCAGCGGCccccggUCACCGguGGCGgCAGUGUc -3'
miRNA:   3'- -UGUCGCCGu-----GGUGGU--CCGC-GUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 27170 0.67 0.186041
Target:  5'- -aGGUGGCGCCG-CAGaGCGCGuuugugcauuGCGCGu -3'
miRNA:   3'- ugUCGCCGUGGUgGUC-CGCGU----------CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 31222 0.67 0.186041
Target:  5'- cGCAGUccucGCACCAgaGGGCGCugGGCGCc -3'
miRNA:   3'- -UGUCGc---CGUGGUggUCCGCG--UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 22065 0.67 0.186041
Target:  5'- cCGGCGuGCuGCUGCCGGaGCuggccgGCAGCGCGu -3'
miRNA:   3'- uGUCGC-CG-UGGUGGUC-CG------CGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 10429 0.67 0.181123
Target:  5'- uCGGCGGCGuCCACUcGGCcaGCAGCuCGc -3'
miRNA:   3'- uGUCGCCGU-GGUGGuCCG--CGUCGcGC- -5'
11939 3' -62.8 NC_003278.1 + 545 0.67 0.181123
Target:  5'- gACGGCGGUAgCACCcuguuGGgGCAGUaCGa -3'
miRNA:   3'- -UGUCGCCGUgGUGGu----CCgCGUCGcGC- -5'
11939 3' -62.8 NC_003278.1 + 4004 0.67 0.181123
Target:  5'- uGCAuCGGCAgCuugagcGCCAGGCGCGGauccaGCGc -3'
miRNA:   3'- -UGUcGCCGUgG------UGGUCCGCGUCg----CGC- -5'
11939 3' -62.8 NC_003278.1 + 17091 0.68 0.171634
Target:  5'- uCGGCGGUgGCUACCAGGCcgaugaucGCGGUgGCGa -3'
miRNA:   3'- uGUCGCCG-UGGUGGUCCG--------CGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 32178 0.68 0.171634
Target:  5'- -gAGUGGUuuCCGCCAcGGCGUAGC-CGa -3'
miRNA:   3'- ugUCGCCGu-GGUGGU-CCGCGUCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.