miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11940 3' -59.3 NC_003278.1 + 30144 0.66 0.38017
Target:  5'- --uGGAGUGCUUCCGCGAgc-GGCUg -3'
miRNA:   3'- gucCUUCGCGAAGGCGCUgacCCGGu -5'
11940 3' -59.3 NC_003278.1 + 32179 0.66 0.362479
Target:  5'- -cGGAAGCGCUUCCuGCuGgUGGcGCg- -3'
miRNA:   3'- guCCUUCGCGAAGG-CGcUgACC-CGgu -5'
11940 3' -59.3 NC_003278.1 + 19463 0.66 0.345369
Target:  5'- -----cGCGCUcacCCGCGACUacaaccGGGCCAu -3'
miRNA:   3'- guccuuCGCGAa--GGCGCUGA------CCCGGU- -5'
11940 3' -59.3 NC_003278.1 + 18173 0.66 0.337033
Target:  5'- cCGGGGAGCGCUgggCgucaggcguugaCGCGGCUGGcgaaGUCGa -3'
miRNA:   3'- -GUCCUUCGCGAa--G------------GCGCUGACC----CGGU- -5'
11940 3' -59.3 NC_003278.1 + 31209 0.67 0.328845
Target:  5'- cCAGaGGGCGCUgggcgCCagGCGgguguuuguccGCUGGGCCAg -3'
miRNA:   3'- -GUCcUUCGCGAa----GG--CGC-----------UGACCCGGU- -5'
11940 3' -59.3 NC_003278.1 + 18281 0.67 0.320805
Target:  5'- -uGGAGGC-CUUCCGCGg--GGGCg- -3'
miRNA:   3'- guCCUUCGcGAAGGCGCugaCCCGgu -5'
11940 3' -59.3 NC_003278.1 + 6072 0.67 0.305169
Target:  5'- gCAGGccgcccauGCGCUUCUGCGACaggaUGaGGUCGg -3'
miRNA:   3'- -GUCCuu------CGCGAAGGCGCUG----AC-CCGGU- -5'
11940 3' -59.3 NC_003278.1 + 32835 0.67 0.289388
Target:  5'- gCAGGGccacgguGGCGCgggUCCGCGACaGcaaaugcacccuGGCCGg -3'
miRNA:   3'- -GUCCU-------UCGCGa--AGGCGCUGaC------------CCGGU- -5'
11940 3' -59.3 NC_003278.1 + 3928 0.68 0.282823
Target:  5'- -uGGuAGCGCUggaUCCGCGcCUGGcGCuCAa -3'
miRNA:   3'- guCCuUCGCGA---AGGCGCuGACC-CG-GU- -5'
11940 3' -59.3 NC_003278.1 + 6326 0.69 0.242053
Target:  5'- gCAGGAAGUGCgccuuggCGgGACUGaaGGCCAu -3'
miRNA:   3'- -GUCCUUCGCGaag----GCgCUGAC--CCGGU- -5'
11940 3' -59.3 NC_003278.1 + 33192 0.69 0.235753
Target:  5'- -cGGAucggcaauGCGgUUCCGcCGGCUGcGGCCGa -3'
miRNA:   3'- guCCUu-------CGCgAAGGC-GCUGAC-CCGGU- -5'
11940 3' -59.3 NC_003278.1 + 32229 1.08 0.000244
Target:  5'- gCAGGAAGCGCUUCCGCGACUGGGCCAg -3'
miRNA:   3'- -GUCCUUCGCGAAGGCGCUGACCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.