Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 32968 | 0.73 | 0.061139 |
Target: 5'- cCGCCGGCGc-GGUgUCGGCCagugcGCGGCa -3' miRNA: 3'- -GCGGCCGCuaCCGgAGCCGG-----CGUCGg -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 19487 | 0.73 | 0.061139 |
Target: 5'- uGCCGGCGgcGGCCaUCuGCUG-AGCCa -3' miRNA: 3'- gCGGCCGCuaCCGG-AGcCGGCgUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 2358 | 0.74 | 0.051632 |
Target: 5'- cCGaaGGUGAaGGCCUCGGCa-CGGCCa -3' miRNA: 3'- -GCggCCGCUaCCGGAGCCGgcGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 21453 | 0.75 | 0.043568 |
Target: 5'- gGCCGGCcuggcccagGGCCUCGGCgC-CGGCCa -3' miRNA: 3'- gCGGCCGcua------CCGGAGCCG-GcGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 5909 | 0.76 | 0.035708 |
Target: 5'- gGCCuGGUGGUGauCCUCGGCCGCgAGCUg -3' miRNA: 3'- gCGG-CCGCUACc-GGAGCCGGCG-UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 4796 | 0.76 | 0.034705 |
Target: 5'- aGUCGGUGAUGGCCa-GGCCGaccaaguaGGCCu -3' miRNA: 3'- gCGGCCGCUACCGGagCCGGCg-------UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 31254 | 0.77 | 0.03186 |
Target: 5'- aGCCuGGCGGcgGGCCUCGGguaucugcucuCCGCAGUCc -3' miRNA: 3'- gCGG-CCGCUa-CCGGAGCC-----------GGCGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 32261 | 0.81 | 0.013473 |
Target: 5'- cCGUCGGCGAcauCCUCGGCCGCAuGCCg -3' miRNA: 3'- -GCGGCCGCUaccGGAGCCGGCGU-CGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 13137 | 0.88 | 0.003671 |
Target: 5'- gCGUCGGCGAU-GCCUCGGCCGuCAGCCc -3' miRNA: 3'- -GCGGCCGCUAcCGGAGCCGGC-GUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 33276 | 1.11 | 0.00005 |
Target: 5'- aCGCCGGCGAUGGCCUCGGCCGCAGCCg -3' miRNA: 3'- -GCGGCCGCUACCGGAGCCGGCGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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