Results 61 - 80 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 9759 | 0.68 | 0.155587 |
Target: 5'- aGCCGGCGAgcaacaucaGGCagaGGCUGguCAGCCc -3' miRNA: 3'- gCGGCCGCUa--------CCGgagCCGGC--GUCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 16884 | 0.68 | 0.164071 |
Target: 5'- aCGCCaucuGCGAagagGGCUUCGaGCCaguccgguGCGGCCg -3' miRNA: 3'- -GCGGc---CGCUa---CCGGAGC-CGG--------CGUCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 25528 | 0.68 | 0.155587 |
Target: 5'- uGuuG-CGGUGGCugaCUCGGCCGCccaGGUCg -3' miRNA: 3'- gCggCcGCUACCG---GAGCCGGCG---UCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 21750 | 0.67 | 0.17297 |
Target: 5'- uCGauGGUGAUGGCCUgcGCCGgGGCg -3' miRNA: 3'- -GCggCCGCUACCGGAgcCGGCgUCGg -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 29254 | 0.67 | 0.172515 |
Target: 5'- cCGCCGGUgcGAUcuucaccGGCagCGGCgCGCAGCUu -3' miRNA: 3'- -GCGGCCG--CUA-------CCGgaGCCG-GCGUCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 21528 | 0.67 | 0.182296 |
Target: 5'- gGUCaGCGcgGGCCgucaGGCUGUcGCCg -3' miRNA: 3'- gCGGcCGCuaCCGGag--CCGGCGuCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 10356 | 0.67 | 0.187124 |
Target: 5'- uCGCCaacGGCGAgcugcUGGCCgagUGGaCGCcGCCg -3' miRNA: 3'- -GCGG---CCGCU-----ACCGGa--GCCgGCGuCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 16556 | 0.67 | 0.187124 |
Target: 5'- uCGCUGGCGAggaUGGaCagcCGGUCGCcacGCCa -3' miRNA: 3'- -GCGGCCGCU---ACC-Gga-GCCGGCGu--CGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 7980 | 0.67 | 0.192065 |
Target: 5'- gGCCGcGCcaucaugGGCCUCGGCCugGGCg -3' miRNA: 3'- gCGGC-CGcua----CCGGAGCCGGcgUCGg -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 31683 | 0.67 | 0.177579 |
Target: 5'- aGCCuGCGGcgccGCCgcccaGGCCGCAGCa -3' miRNA: 3'- gCGGcCGCUac--CGGag---CCGGCGUCGg -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 33012 | 0.67 | 0.189087 |
Target: 5'- gCGCCGGCGGauUGGUCgaacccaacuacGCCGUaguGGCCg -3' miRNA: 3'- -GCGGCCGCU--ACCGGagc---------CGGCG---UCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 21369 | 0.67 | 0.192065 |
Target: 5'- aGCCGGCGAgcaGGCCguucaccaGGCCcuggacgaucauGUuGCCg -3' miRNA: 3'- gCGGCCGCUa--CCGGag------CCGG------------CGuCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 23478 | 0.67 | 0.177579 |
Target: 5'- cCGCCGGUGucgucGGCCa-GGUCGCuGaCCa -3' miRNA: 3'- -GCGGCCGCua---CCGGagCCGGCGuC-GG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 10429 | 0.67 | 0.177579 |
Target: 5'- uCGgCGGCGucca-CUCGGCCaGCAGCUc -3' miRNA: 3'- -GCgGCCGCuaccgGAGCCGG-CGUCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 7020 | 0.67 | 0.177579 |
Target: 5'- aGCCGGCGG-GGCgcgggguacgCUCGGUCaaccgccagagGCGGUCa -3' miRNA: 3'- gCGGCCGCUaCCG----------GAGCCGG-----------CGUCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 14949 | 0.67 | 0.182296 |
Target: 5'- aGCCGGC--UGGCagUGGCUGCGuuGCCc -3' miRNA: 3'- gCGGCCGcuACCGgaGCCGGCGU--CGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 22360 | 0.67 | 0.182296 |
Target: 5'- uGCCGGCGGUaccgaGGaCCgagccgagcagaUCGG-UGCGGCCg -3' miRNA: 3'- gCGGCCGCUA-----CC-GG------------AGCCgGCGUCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 18743 | 0.67 | 0.182296 |
Target: 5'- gGCCGGCGGgaagGGauuacaGGCCGaUGGCCu -3' miRNA: 3'- gCGGCCGCUa---CCggag--CCGGC-GUCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 18978 | 0.66 | 0.201767 |
Target: 5'- -aCCGGC-AUGGaCC-CGGCCgaccuccuugccuGCGGCCa -3' miRNA: 3'- gcGGCCGcUACC-GGaGCCGG-------------CGUCGG- -5' |
|||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 11137 | 0.66 | 0.19712 |
Target: 5'- uGCCGGCGA-GGUUgcaGGCaauGCAGUUg -3' miRNA: 3'- gCGGCCGCUaCCGGag-CCGg--CGUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home