miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 26 0.7 0.103681
Target:  5'- gCGCCGGCGaAUGaGCCgaugCGGCCaGgAaacGCCa -3'
miRNA:   3'- -GCGGCCGC-UAC-CGGa---GCCGG-CgU---CGG- -5'
11941 5' -64.4 NC_003278.1 + 21594 0.7 0.100872
Target:  5'- gGCCGGCGAcaGCCUgaCGGCCcGCgcugaccaGGCCu -3'
miRNA:   3'- gCGGCCGCUacCGGA--GCCGG-CG--------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 32352 0.7 0.099222
Target:  5'- gGCCGGCGGcgucgauaucgccgGGCagCGGCaUGCGGCCg -3'
miRNA:   3'- gCGGCCGCUa-------------CCGgaGCCG-GCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 14236 0.7 0.098135
Target:  5'- gCGcCCGGCGAgacGGCugaccccaucccCUCGGCCGCucAGaCCa -3'
miRNA:   3'- -GC-GGCCGCUa--CCG------------GAGCCGGCG--UC-GG- -5'
11941 5' -64.4 NC_003278.1 + 19798 0.7 0.097328
Target:  5'- uGCCGGUGccGGCCagcgCGgcagcgcucuggauGCCGCGGCUg -3'
miRNA:   3'- gCGGCCGCuaCCGGa---GC--------------CGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 21519 0.71 0.095468
Target:  5'- gGCCGGCGccgaGGcCCUgGGCCaggcCGGCCa -3'
miRNA:   3'- gCGGCCGCua--CC-GGAgCCGGc---GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 14914 0.71 0.09034
Target:  5'- gGCCGGUaGUaGCC-CGGCCGCguucAGCCu -3'
miRNA:   3'- gCGGCCGcUAcCGGaGCCGGCG----UCGG- -5'
11941 5' -64.4 NC_003278.1 + 1604 0.71 0.089346
Target:  5'- gGCCGGCGAgcUGGUCgucgCGGCUGauguucuugauugAGCCg -3'
miRNA:   3'- gCGGCCGCU--ACCGGa---GCCGGCg------------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 7830 0.71 0.087874
Target:  5'- aCGCCGGCGGUGcGaCCguaGuGCCGcCAGCa -3'
miRNA:   3'- -GCGGCCGCUAC-C-GGag-C-CGGC-GUCGg -5'
11941 5' -64.4 NC_003278.1 + 9094 0.71 0.087874
Target:  5'- uCGCCaGGCGcUGGUgCUCGGC-GguGCCg -3'
miRNA:   3'- -GCGG-CCGCuACCG-GAGCCGgCguCGG- -5'
11941 5' -64.4 NC_003278.1 + 17502 0.71 0.087874
Target:  5'- uCGCgguaGGCGGUGGCCUCuuCCuuugucuuGCAGCCg -3'
miRNA:   3'- -GCGg---CCGCUACCGGAGccGG--------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 29704 0.71 0.087874
Target:  5'- uGCCGGCaccGGCCUC-GCCgGUGGCCu -3'
miRNA:   3'- gCGGCCGcuaCCGGAGcCGG-CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 20211 0.71 0.083134
Target:  5'- cCGCCGGCGucGGCCgcgaguaCGGCCagAGCCu -3'
miRNA:   3'- -GCGGCCGCuaCCGGa------GCCGGcgUCGG- -5'
11941 5' -64.4 NC_003278.1 + 20889 0.71 0.082904
Target:  5'- uGCCGGCGAgggugaUGGCaa-GGCUGCcaacgguAGCCa -3'
miRNA:   3'- gCGGCCGCU------ACCGgagCCGGCG-------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 11947 0.72 0.080857
Target:  5'- gGUCGGCGccGGCCcgCGGCgaugcccaagGCAGCCa -3'
miRNA:   3'- gCGGCCGCuaCCGGa-GCCGg---------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 22017 0.72 0.076479
Target:  5'- aGCCGGCGc--GCCaguucgUCGGUCGCGGCg -3'
miRNA:   3'- gCGGCCGCuacCGG------AGCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 30125 0.72 0.076479
Target:  5'- aCGCCcaGGUGGUugaGGUUgUCGGCUGCGGCCu -3'
miRNA:   3'- -GCGG--CCGCUA---CCGG-AGCCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 15355 0.72 0.076479
Target:  5'- cCGgUGGCGGUGGCCUgaCGGCaGCAGaCa -3'
miRNA:   3'- -GCgGCCGCUACCGGA--GCCGgCGUCgG- -5'
11941 5' -64.4 NC_003278.1 + 30935 0.72 0.070336
Target:  5'- gGUCGaaGCGGUGGgCUUGGCCGUuguacaGGCCg -3'
miRNA:   3'- gCGGC--CGCUACCgGAGCCGGCG------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 14333 0.72 0.068205
Target:  5'- gCGCUGGCGAaucagcuUGGUCUgagCGGCCGaggggaugggguCAGCCg -3'
miRNA:   3'- -GCGGCCGCU-------ACCGGA---GCCGGC------------GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.