miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 9094 0.71 0.087874
Target:  5'- uCGCCaGGCGcUGGUgCUCGGC-GguGCCg -3'
miRNA:   3'- -GCGG-CCGCuACCG-GAGCCGgCguCGG- -5'
11941 5' -64.4 NC_003278.1 + 9420 0.69 0.136089
Target:  5'- gGCUcacGCGcUGGCCUCGGC-GCAGUUg -3'
miRNA:   3'- gCGGc--CGCuACCGGAGCCGgCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 9759 0.68 0.155587
Target:  5'- aGCCGGCGAgcaacaucaGGCagaGGCUGguCAGCCc -3'
miRNA:   3'- gCGGCCGCUa--------CCGgagCCGGC--GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 9841 0.66 0.207577
Target:  5'- gGUCGaGCGuaucggccUGGCCUgGGCCGagugcGCCg -3'
miRNA:   3'- gCGGC-CGCu-------ACCGGAgCCGGCgu---CGG- -5'
11941 5' -64.4 NC_003278.1 + 9985 0.68 0.155173
Target:  5'- cCGCCuGGUGAUauucaucgacaacGGCCg-GGuCCGCAGCa -3'
miRNA:   3'- -GCGG-CCGCUA-------------CCGGagCC-GGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 10356 0.67 0.187124
Target:  5'- uCGCCaacGGCGAgcugcUGGCCgagUGGaCGCcGCCg -3'
miRNA:   3'- -GCGG---CCGCU-----ACCGGa--GCCgGCGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 10429 0.67 0.177579
Target:  5'- uCGgCGGCGucca-CUCGGCCaGCAGCUc -3'
miRNA:   3'- -GCgGCCGCuaccgGAGCCGG-CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 11137 0.66 0.19712
Target:  5'- uGCCGGCGA-GGUUgcaGGCaauGCAGUUg -3'
miRNA:   3'- gCGGCCGCUaCCGGag-CCGg--CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 11947 0.72 0.080857
Target:  5'- gGUCGGCGccGGCCcgCGGCgaugcccaagGCAGCCa -3'
miRNA:   3'- gCGGCCGCuaCCGGa-GCCGg---------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 13053 0.68 0.143603
Target:  5'- aGCgGGCgcaGAUGGCCUgggaaGGCCuCAGCa -3'
miRNA:   3'- gCGgCCG---CUACCGGAg----CCGGcGUCGg -5'
11941 5' -64.4 NC_003278.1 + 13137 0.88 0.003671
Target:  5'- gCGUCGGCGAU-GCCUCGGCCGuCAGCCc -3'
miRNA:   3'- -GCGGCCGCUAcCGGAGCCGGC-GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 13209 0.69 0.132469
Target:  5'- gGCaGGCGAUGGgCUgaCGGCCGaGGCa -3'
miRNA:   3'- gCGgCCGCUACCgGA--GCCGGCgUCGg -5'
11941 5' -64.4 NC_003278.1 + 13938 0.66 0.216286
Target:  5'- aCGCCGGCGggGgucuguuGCCaccacucgaggaugUCGGUCaGCgAGCCg -3'
miRNA:   3'- -GCGGCCGCuaC-------CGG--------------AGCCGG-CG-UCGG- -5'
11941 5' -64.4 NC_003278.1 + 14236 0.7 0.098135
Target:  5'- gCGcCCGGCGAgacGGCugaccccaucccCUCGGCCGCucAGaCCa -3'
miRNA:   3'- -GC-GGCCGCUa--CCG------------GAGCCGGCG--UC-GG- -5'
11941 5' -64.4 NC_003278.1 + 14333 0.72 0.068205
Target:  5'- gCGCUGGCGAaucagcuUGGUCUgagCGGCCGaggggaugggguCAGCCg -3'
miRNA:   3'- -GCGGCCGCU-------ACCGGA---GCCGGC------------GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 14631 0.69 0.122136
Target:  5'- gGCCGGCaacGGCCuggUCGGCgGUGGCg -3'
miRNA:   3'- gCGGCCGcuaCCGG---AGCCGgCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 14914 0.71 0.09034
Target:  5'- gGCCGGUaGUaGCC-CGGCCGCguucAGCCu -3'
miRNA:   3'- gCGGCCGcUAcCGGaGCCGGCG----UCGG- -5'
11941 5' -64.4 NC_003278.1 + 14949 0.67 0.182296
Target:  5'- aGCCGGC--UGGCagUGGCUGCGuuGCCc -3'
miRNA:   3'- gCGGCCGcuACCGgaGCCGGCGU--CGG- -5'
11941 5' -64.4 NC_003278.1 + 15355 0.72 0.076479
Target:  5'- cCGgUGGCGGUGGCCUgaCGGCaGCAGaCa -3'
miRNA:   3'- -GCgGCCGCUACCGGA--GCCGgCGUCgG- -5'
11941 5' -64.4 NC_003278.1 + 16556 0.67 0.187124
Target:  5'- uCGCUGGCGAggaUGGaCagcCGGUCGCcacGCCa -3'
miRNA:   3'- -GCGGCCGCU---ACC-Gga-GCCGGCGu--CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.