miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 16884 0.68 0.164071
Target:  5'- aCGCCaucuGCGAagagGGCUUCGaGCCaguccgguGCGGCCg -3'
miRNA:   3'- -GCGGc---CGCUa---CCGGAGC-CGG--------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 17295 0.66 0.20229
Target:  5'- aCGCCGcCGAUGaCCgcgcuaUUGGUCGCGGCUu -3'
miRNA:   3'- -GCGGCcGCUACcGG------AGCCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 17379 0.66 0.200208
Target:  5'- aCGCCGaggaugcGCGGUaccacgcccaagcgGGCCUUGGCgGCaagcaaGGCCu -3'
miRNA:   3'- -GCGGC-------CGCUA--------------CCGGAGCCGgCG------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 17502 0.71 0.087874
Target:  5'- uCGCgguaGGCGGUGGCCUCuuCCuuugucuuGCAGCCg -3'
miRNA:   3'- -GCGg---CCGCUACCGGAGccGG--------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 18571 0.66 0.196609
Target:  5'- gGCUGGgcgucacccauuuCGAUGGUCUCGuGCCG--GCCg -3'
miRNA:   3'- gCGGCC-------------GCUACCGGAGC-CGGCguCGG- -5'
11941 5' -64.4 NC_003278.1 + 18743 0.67 0.182296
Target:  5'- gGCCGGCGGgaagGGauuacaGGCCGaUGGCCu -3'
miRNA:   3'- gCGGCCGCUa---CCggag--CCGGC-GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 18978 0.66 0.201767
Target:  5'- -aCCGGC-AUGGaCC-CGGCCgaccuccuugccuGCGGCCa -3'
miRNA:   3'- gcGGCCGcUACC-GGaGCCGG-------------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 19030 0.7 0.106563
Target:  5'- gGCCGGguccaugcCGGUGGCCUCGGgCuCGGUg -3'
miRNA:   3'- gCGGCC--------GCUACCGGAGCCgGcGUCGg -5'
11941 5' -64.4 NC_003278.1 + 19063 0.68 0.1398
Target:  5'- -aCCGGCGAUcaCCU-GGCCGCAGgCa -3'
miRNA:   3'- gcGGCCGCUAccGGAgCCGGCGUCgG- -5'
11941 5' -64.4 NC_003278.1 + 19487 0.73 0.061139
Target:  5'- uGCCGGCGgcGGCCaUCuGCUG-AGCCa -3'
miRNA:   3'- gCGGCCGCuaCCGG-AGcCGGCgUCGG- -5'
11941 5' -64.4 NC_003278.1 + 19540 0.7 0.103681
Target:  5'- -aCCGGCuucacgGAUGGCC-CGGuuGUAGUCg -3'
miRNA:   3'- gcGGCCG------CUACCGGaGCCggCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 19798 0.7 0.097328
Target:  5'- uGCCGGUGccGGCCagcgCGgcagcgcucuggauGCCGCGGCUg -3'
miRNA:   3'- gCGGCCGCuaCCGGa---GC--------------CGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 19964 0.69 0.136089
Target:  5'- gGCagGGUGcgGGCCUguuGCCGCAGCg -3'
miRNA:   3'- gCGg-CCGCuaCCGGAgc-CGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 20046 0.68 0.1398
Target:  5'- cCGCgGGCGAcaUGGaCCUCGGCgacacUGCugacauuGCCu -3'
miRNA:   3'- -GCGgCCGCU--ACC-GGAGCCG-----GCGu------CGG- -5'
11941 5' -64.4 NC_003278.1 + 20211 0.71 0.083134
Target:  5'- cCGCCGGCGucGGCCgcgaguaCGGCCagAGCCu -3'
miRNA:   3'- -GCGGCCGCuaCCGGa------GCCGGcgUCGG- -5'
11941 5' -64.4 NC_003278.1 + 20304 0.68 0.139425
Target:  5'- gGCCguGGCGGUGGUgaccgucuccaggCUCuGGCCGUacucgcGGCCg -3'
miRNA:   3'- gCGG--CCGCUACCG-------------GAG-CCGGCG------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 20889 0.71 0.082904
Target:  5'- uGCCGGCGAgggugaUGGCaa-GGCUGCcaacgguAGCCa -3'
miRNA:   3'- gCGGCCGCU------ACCGgagCCGGCG-------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 21277 0.69 0.136089
Target:  5'- aCGCCGGCGAaGGCg-CGGUacaucaGGCCg -3'
miRNA:   3'- -GCGGCCGCUaCCGgaGCCGgcg---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 21369 0.67 0.192065
Target:  5'- aGCCGGCGAgcaGGCCguucaccaGGCCcuggacgaucauGUuGCCg -3'
miRNA:   3'- gCGGCCGCUa--CCGGag------CCGG------------CGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 21453 0.75 0.043568
Target:  5'- gGCCGGCcuggcccagGGCCUCGGCgC-CGGCCa -3'
miRNA:   3'- gCGGCCGcua------CCGGAGCCG-GcGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.