miRNA display CGI


Results 61 - 80 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 21486 0.66 0.20229
Target:  5'- gGCCGGCccgcugGGCgugauugcacguCUCGGCCaaGGCCu -3'
miRNA:   3'- gCGGCCGcua---CCG------------GAGCCGGcgUCGG- -5'
11941 5' -64.4 NC_003278.1 + 21519 0.71 0.095468
Target:  5'- gGCCGGCGccgaGGcCCUgGGCCaggcCGGCCa -3'
miRNA:   3'- gCGGCCGCua--CC-GGAgCCGGc---GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 21528 0.67 0.182296
Target:  5'- gGUCaGCGcgGGCCgucaGGCUGUcGCCg -3'
miRNA:   3'- gCGGcCGCuaCCGGag--CCGGCGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 21594 0.7 0.100872
Target:  5'- gGCCGGCGAcaGCCUgaCGGCCcGCgcugaccaGGCCu -3'
miRNA:   3'- gCGGCCGCUacCGGA--GCCGG-CG--------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 21653 0.66 0.205979
Target:  5'- gCGCCGGCGccaucggugcccUGGUgCUCGGCgccagcgccccggCGCAGgCCa -3'
miRNA:   3'- -GCGGCCGCu-----------ACCG-GAGCCG-------------GCGUC-GG- -5'
11941 5' -64.4 NC_003278.1 + 21750 0.67 0.17297
Target:  5'- uCGauGGUGAUGGCCUgcGCCGgGGCg -3'
miRNA:   3'- -GCggCCGCUACCGGAgcCGGCgUCGg -5'
11941 5' -64.4 NC_003278.1 + 21789 0.69 0.118861
Target:  5'- gGCCGGCGcgGGCagCGacaCCGCAGaCCu -3'
miRNA:   3'- gCGGCCGCuaCCGgaGCc--GGCGUC-GG- -5'
11941 5' -64.4 NC_003278.1 + 22017 0.72 0.076479
Target:  5'- aGCCGGCGc--GCCaguucgUCGGUCGCGGCg -3'
miRNA:   3'- gCGGCCGCuacCGG------AGCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 22060 0.69 0.122136
Target:  5'- gCGCCGGCug-GGCaccgaugCGGCUGCuGCUg -3'
miRNA:   3'- -GCGGCCGcuaCCGga-----GCCGGCGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 22360 0.67 0.182296
Target:  5'- uGCCGGCGGUaccgaGGaCCgagccgagcagaUCGG-UGCGGCCg -3'
miRNA:   3'- gCGGCCGCUA-----CC-GG------------AGCCgGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 22822 0.7 0.115668
Target:  5'- gCGCCGGCGcuggcgGGCCUgcCGaucCUGCAGCUg -3'
miRNA:   3'- -GCGGCCGCua----CCGGA--GCc--GGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 22865 0.69 0.136089
Target:  5'- gCGCCGGCGcgagcaccGGCUUCaGGuuGUuGCCg -3'
miRNA:   3'- -GCGGCCGCua------CCGGAG-CCggCGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 22955 0.68 0.151495
Target:  5'- gGCCGGUGgcGGCaagaCuGCCaGCGGCCu -3'
miRNA:   3'- gCGGCCGCuaCCGga--GcCGG-CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 23478 0.67 0.177579
Target:  5'- cCGCCGGUGucgucGGCCa-GGUCGCuGaCCa -3'
miRNA:   3'- -GCGGCCGCua---CCGGagCCGGCGuC-GG- -5'
11941 5' -64.4 NC_003278.1 + 25528 0.68 0.155587
Target:  5'- uGuuG-CGGUGGCugaCUCGGCCGCccaGGUCg -3'
miRNA:   3'- gCggCcGCUACCG---GAGCCGGCG---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 29254 0.67 0.172515
Target:  5'- cCGCCGGUgcGAUcuucaccGGCagCGGCgCGCAGCUu -3'
miRNA:   3'- -GCGGCCG--CUA-------CCGgaGCCG-GCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 29704 0.71 0.087874
Target:  5'- uGCCGGCaccGGCCUC-GCCgGUGGCCu -3'
miRNA:   3'- gCGGCCGcuaCCGGAGcCGG-CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 29873 0.68 0.151495
Target:  5'- cCGCCGGCGc-GGCUguugUC-GCUGCGGUCg -3'
miRNA:   3'- -GCGGCCGCuaCCGG----AGcCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 30044 0.68 0.159778
Target:  5'- -aCCcGCGAgaGCCa-GGCCGCAGCCg -3'
miRNA:   3'- gcGGcCGCUacCGGagCCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 30125 0.72 0.076479
Target:  5'- aCGCCcaGGUGGUugaGGUUgUCGGCUGCGGCCu -3'
miRNA:   3'- -GCGG--CCGCUA---CCGG-AGCCGGCGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.