miRNA display CGI


Results 81 - 90 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 30935 0.72 0.070336
Target:  5'- gGUCGaaGCGGUGGgCUUGGCCGUuguacaGGCCg -3'
miRNA:   3'- gCGGC--CGCUACCgGAGCCGGCG------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 31254 0.77 0.03186
Target:  5'- aGCCuGGCGGcgGGCCUCGGguaucugcucuCCGCAGUCc -3'
miRNA:   3'- gCGG-CCGCUa-CCGGAGCC-----------GGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 31575 0.68 0.143989
Target:  5'- aGCUGGCccacucgacagccuUGGCCuguuggcgaauUCGGCUGCAGCg -3'
miRNA:   3'- gCGGCCGcu------------ACCGG-----------AGCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 31683 0.67 0.177579
Target:  5'- aGCCuGCGGcgccGCCgcccaGGCCGCAGCa -3'
miRNA:   3'- gCGGcCGCUac--CGGag---CCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 32101 0.66 0.19712
Target:  5'- aGCCuGCucGGUGGCUUCGGCUaC-GCCg -3'
miRNA:   3'- gCGGcCG--CUACCGGAGCCGGcGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 32261 0.81 0.013473
Target:  5'- cCGUCGGCGAcauCCUCGGCCGCAuGCCg -3'
miRNA:   3'- -GCGGCCGCUaccGGAGCCGGCGU-CGG- -5'
11941 5' -64.4 NC_003278.1 + 32352 0.7 0.099222
Target:  5'- gGCCGGCGGcgucgauaucgccgGGCagCGGCaUGCGGCCg -3'
miRNA:   3'- gCGGCCGCUa-------------CCGgaGCCG-GCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 32968 0.73 0.061139
Target:  5'- cCGCCGGCGc-GGUgUCGGCCagugcGCGGCa -3'
miRNA:   3'- -GCGGCCGCuaCCGgAGCCGG-----CGUCGg -5'
11941 5' -64.4 NC_003278.1 + 33012 0.67 0.189087
Target:  5'- gCGCCGGCGGauUGGUCgaacccaacuacGCCGUaguGGCCg -3'
miRNA:   3'- -GCGGCCGCU--ACCGGagc---------CGGCG---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 33276 1.11 0.00005
Target:  5'- aCGCCGGCGAUGGCCUCGGCCGCAGCCg -3'
miRNA:   3'- -GCGGCCGCUACCGGAGCCGGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.