miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 19487 0.73 0.061139
Target:  5'- uGCCGGCGgcGGCCaUCuGCUG-AGCCa -3'
miRNA:   3'- gCGGCCGCuaCCGG-AGcCGGCgUCGG- -5'
11941 5' -64.4 NC_003278.1 + 19063 0.68 0.1398
Target:  5'- -aCCGGCGAUcaCCU-GGCCGCAGgCa -3'
miRNA:   3'- gcGGCCGCUAccGGAgCCGGCGUCgG- -5'
11941 5' -64.4 NC_003278.1 + 19030 0.7 0.106563
Target:  5'- gGCCGGguccaugcCGGUGGCCUCGGgCuCGGUg -3'
miRNA:   3'- gCGGCC--------GCUACCGGAGCCgGcGUCGg -5'
11941 5' -64.4 NC_003278.1 + 18978 0.66 0.201767
Target:  5'- -aCCGGC-AUGGaCC-CGGCCgaccuccuugccuGCGGCCa -3'
miRNA:   3'- gcGGCCGcUACC-GGaGCCGG-------------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 18743 0.67 0.182296
Target:  5'- gGCCGGCGGgaagGGauuacaGGCCGaUGGCCu -3'
miRNA:   3'- gCGGCCGCUa---CCggag--CCGGC-GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 18571 0.66 0.196609
Target:  5'- gGCUGGgcgucacccauuuCGAUGGUCUCGuGCCG--GCCg -3'
miRNA:   3'- gCGGCC-------------GCUACCGGAGC-CGGCguCGG- -5'
11941 5' -64.4 NC_003278.1 + 17502 0.71 0.087874
Target:  5'- uCGCgguaGGCGGUGGCCUCuuCCuuugucuuGCAGCCg -3'
miRNA:   3'- -GCGg---CCGCUACCGGAGccGG--------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 17379 0.66 0.200208
Target:  5'- aCGCCGaggaugcGCGGUaccacgcccaagcgGGCCUUGGCgGCaagcaaGGCCu -3'
miRNA:   3'- -GCGGC-------CGCUA--------------CCGGAGCCGgCG------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 17295 0.66 0.20229
Target:  5'- aCGCCGcCGAUGaCCgcgcuaUUGGUCGCGGCUu -3'
miRNA:   3'- -GCGGCcGCUACcGG------AGCCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 16884 0.68 0.164071
Target:  5'- aCGCCaucuGCGAagagGGCUUCGaGCCaguccgguGCGGCCg -3'
miRNA:   3'- -GCGGc---CGCUa---CCGGAGC-CGG--------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 16556 0.67 0.187124
Target:  5'- uCGCUGGCGAggaUGGaCagcCGGUCGCcacGCCa -3'
miRNA:   3'- -GCGGCCGCU---ACC-Gga-GCCGGCGu--CGG- -5'
11941 5' -64.4 NC_003278.1 + 15355 0.72 0.076479
Target:  5'- cCGgUGGCGGUGGCCUgaCGGCaGCAGaCa -3'
miRNA:   3'- -GCgGCCGCUACCGGA--GCCGgCGUCgG- -5'
11941 5' -64.4 NC_003278.1 + 14949 0.67 0.182296
Target:  5'- aGCCGGC--UGGCagUGGCUGCGuuGCCc -3'
miRNA:   3'- gCGGCCGcuACCGgaGCCGGCGU--CGG- -5'
11941 5' -64.4 NC_003278.1 + 14914 0.71 0.09034
Target:  5'- gGCCGGUaGUaGCC-CGGCCGCguucAGCCu -3'
miRNA:   3'- gCGGCCGcUAcCGGaGCCGGCG----UCGG- -5'
11941 5' -64.4 NC_003278.1 + 14631 0.69 0.122136
Target:  5'- gGCCGGCaacGGCCuggUCGGCgGUGGCg -3'
miRNA:   3'- gCGGCCGcuaCCGG---AGCCGgCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 14333 0.72 0.068205
Target:  5'- gCGCUGGCGAaucagcuUGGUCUgagCGGCCGaggggaugggguCAGCCg -3'
miRNA:   3'- -GCGGCCGCU-------ACCGGA---GCCGGC------------GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 14236 0.7 0.098135
Target:  5'- gCGcCCGGCGAgacGGCugaccccaucccCUCGGCCGCucAGaCCa -3'
miRNA:   3'- -GC-GGCCGCUa--CCG------------GAGCCGGCG--UC-GG- -5'
11941 5' -64.4 NC_003278.1 + 13938 0.66 0.216286
Target:  5'- aCGCCGGCGggGgucuguuGCCaccacucgaggaugUCGGUCaGCgAGCCg -3'
miRNA:   3'- -GCGGCCGCuaC-------CGG--------------AGCCGG-CG-UCGG- -5'
11941 5' -64.4 NC_003278.1 + 13209 0.69 0.132469
Target:  5'- gGCaGGCGAUGGgCUgaCGGCCGaGGCa -3'
miRNA:   3'- gCGgCCGCUACCgGA--GCCGGCgUCGg -5'
11941 5' -64.4 NC_003278.1 + 13137 0.88 0.003671
Target:  5'- gCGUCGGCGAU-GCCUCGGCCGuCAGCCc -3'
miRNA:   3'- -GCGGCCGCUAcCGGAGCCGGC-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.