Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 5049 | 0.7 | 0.112555 |
Target: 5'- uGCuCGGCGAUcgcuucgacGGCCUCG-CCGaccuGGCCg -3' miRNA: 3'- gCG-GCCGCUA---------CCGGAGCcGGCg---UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 4796 | 0.76 | 0.034705 |
Target: 5'- aGUCGGUGAUGGCCa-GGCCGaccaaguaGGCCu -3' miRNA: 3'- gCGGCCGCUACCGGagCCGGCg-------UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 2995 | 0.69 | 0.136089 |
Target: 5'- aGCCacaccuGGCGAUcaCCgaaCGGCCGCAGCg -3' miRNA: 3'- gCGG------CCGCUAccGGa--GCCGGCGUCGg -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 2580 | 0.69 | 0.137562 |
Target: 5'- gGCCGGCGGuauaggugaacUGGCgCccacCGGCCGUgauggucuugcggauAGCCa -3' miRNA: 3'- gCGGCCGCU-----------ACCG-Ga---GCCGGCG---------------UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 2358 | 0.74 | 0.051632 |
Target: 5'- cCGaaGGUGAaGGCCUCGGCa-CGGCCa -3' miRNA: 3'- -GCggCCGCUaCCGGAGCCGgcGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 2339 | 0.66 | 0.22416 |
Target: 5'- gGCCgaacgGGCGGUGGUa-CGaGCCGCcGCUg -3' miRNA: 3'- gCGG-----CCGCUACCGgaGC-CGGCGuCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 2032 | 0.68 | 0.164071 |
Target: 5'- uGCCgcGGCGcAUGuaCUUGGCCaGCGGCg -3' miRNA: 3'- gCGG--CCGC-UACcgGAGCCGG-CGUCGg -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 1647 | 0.69 | 0.132469 |
Target: 5'- uCGCCGGCcuGcgGGUCUau-CCGCAGCUg -3' miRNA: 3'- -GCGGCCG--CuaCCGGAgccGGCGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 1604 | 0.71 | 0.089346 |
Target: 5'- gGCCGGCGAgcUGGUCgucgCGGCUGauguucuugauugAGCCg -3' miRNA: 3'- gCGGCCGCU--ACCGGa---GCCGGCg------------UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 26 | 0.7 | 0.103681 |
Target: 5'- gCGCCGGCGaAUGaGCCgaugCGGCCaGgAaacGCCa -3' miRNA: 3'- -GCGGCCGC-UAC-CGGa---GCCGG-CgU---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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