Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11941 | 5' | -64.4 | NC_003278.1 | + | 8039 | 0.68 | 0.147501 |
Target: 5'- gGCCgaGGCccauGAUGGCgC-CGGCCGUGGCg -3' miRNA: 3'- gCGG--CCG----CUACCG-GaGCCGGCGUCGg -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 31575 | 0.68 | 0.143989 |
Target: 5'- aGCUGGCccacucgacagccuUGGCCuguuggcgaauUCGGCUGCAGCg -3' miRNA: 3'- gCGGCCGcu------------ACCGG-----------AGCCGGCGUCGg -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 19063 | 0.68 | 0.1398 |
Target: 5'- -aCCGGCGAUcaCCU-GGCCGCAGgCa -3' miRNA: 3'- gcGGCCGCUAccGGAgCCGGCGUCgG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 5500 | 0.68 | 0.1398 |
Target: 5'- gGCUGGCGAUGGU----GCCGCugacGCCg -3' miRNA: 3'- gCGGCCGCUACCGgagcCGGCGu---CGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 20304 | 0.68 | 0.139425 |
Target: 5'- gGCCguGGCGGUGGUgaccgucuccaggCUCuGGCCGUacucgcGGCCg -3' miRNA: 3'- gCGG--CCGCUACCG-------------GAG-CCGGCG------UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 21277 | 0.69 | 0.136089 |
Target: 5'- aCGCCGGCGAaGGCg-CGGUacaucaGGCCg -3' miRNA: 3'- -GCGGCCGCUaCCGgaGCCGgcg---UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 23478 | 0.67 | 0.177579 |
Target: 5'- cCGCCGGUGucgucGGCCa-GGUCGCuGaCCa -3' miRNA: 3'- -GCGGCCGCua---CCGGagCCGGCGuC-GG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 10429 | 0.67 | 0.177579 |
Target: 5'- uCGgCGGCGucca-CUCGGCCaGCAGCUc -3' miRNA: 3'- -GCgGCCGCuaccgGAGCCGG-CGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 7020 | 0.67 | 0.177579 |
Target: 5'- aGCCGGCGG-GGCgcgggguacgCUCGGUCaaccgccagagGCGGUCa -3' miRNA: 3'- gCGGCCGCUaCCG----------GAGCCGG-----------CGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 13938 | 0.66 | 0.216286 |
Target: 5'- aCGCCGGCGggGgucuguuGCCaccacucgaggaugUCGGUCaGCgAGCCg -3' miRNA: 3'- -GCGGCCGCuaC-------CGG--------------AGCCGG-CG-UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 7511 | 0.66 | 0.212984 |
Target: 5'- uCGCCcaGCGcUGGUCgCGGCgGUAGUCg -3' miRNA: 3'- -GCGGc-CGCuACCGGaGCCGgCGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 17295 | 0.66 | 0.20229 |
Target: 5'- aCGCCGcCGAUGaCCgcgcuaUUGGUCGCGGCUu -3' miRNA: 3'- -GCGGCcGCUACcGG------AGCCGGCGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 17379 | 0.66 | 0.200208 |
Target: 5'- aCGCCGaggaugcGCGGUaccacgcccaagcgGGCCUUGGCgGCaagcaaGGCCu -3' miRNA: 3'- -GCGGC-------CGCUA--------------CCGGAGCCGgCG------UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 11137 | 0.66 | 0.19712 |
Target: 5'- uGCCGGCGA-GGUUgcaGGCaauGCAGUUg -3' miRNA: 3'- gCGGCCGCUaCCGGag-CCGg--CGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 18571 | 0.66 | 0.196609 |
Target: 5'- gGCUGGgcgucacccauuuCGAUGGUCUCGuGCCG--GCCg -3' miRNA: 3'- gCGGCC-------------GCUACCGGAGC-CGGCguCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 21369 | 0.67 | 0.192065 |
Target: 5'- aGCCGGCGAgcaGGCCguucaccaGGCCcuggacgaucauGUuGCCg -3' miRNA: 3'- gCGGCCGCUa--CCGGag------CCGG------------CGuCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 33012 | 0.67 | 0.189087 |
Target: 5'- gCGCCGGCGGauUGGUCgaacccaacuacGCCGUaguGGCCg -3' miRNA: 3'- -GCGGCCGCU--ACCGGagc---------CGGCG---UCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 18743 | 0.67 | 0.182296 |
Target: 5'- gGCCGGCGGgaagGGauuacaGGCCGaUGGCCu -3' miRNA: 3'- gCGGCCGCUa---CCggag--CCGGC-GUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 22360 | 0.67 | 0.182296 |
Target: 5'- uGCCGGCGGUaccgaGGaCCgagccgagcagaUCGG-UGCGGCCg -3' miRNA: 3'- gCGGCCGCUA-----CC-GG------------AGCCgGCGUCGG- -5' |
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11941 | 5' | -64.4 | NC_003278.1 | + | 14949 | 0.67 | 0.182296 |
Target: 5'- aGCCGGC--UGGCagUGGCUGCGuuGCCc -3' miRNA: 3'- gCGGCCGcuACCGgaGCCGGCGU--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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