miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 31575 0.68 0.143989
Target:  5'- aGCUGGCccacucgacagccuUGGCCuguuggcgaauUCGGCUGCAGCg -3'
miRNA:   3'- gCGGCCGcu------------ACCGG-----------AGCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 8039 0.68 0.147501
Target:  5'- gGCCgaGGCccauGAUGGCgC-CGGCCGUGGCg -3'
miRNA:   3'- gCGG--CCG----CUACCG-GaGCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 21750 0.67 0.17297
Target:  5'- uCGauGGUGAUGGCCUgcGCCGgGGCg -3'
miRNA:   3'- -GCggCCGCUACCGGAgcCGGCgUCGg -5'
11941 5' -64.4 NC_003278.1 + 22360 0.67 0.182296
Target:  5'- uGCCGGCGGUaccgaGGaCCgagccgagcagaUCGG-UGCGGCCg -3'
miRNA:   3'- gCGGCCGCUA-----CC-GG------------AGCCgGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 22060 0.69 0.122136
Target:  5'- gCGCCGGCug-GGCaccgaugCGGCUGCuGCUg -3'
miRNA:   3'- -GCGGCCGcuaCCGga-----GCCGGCGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 22865 0.69 0.136089
Target:  5'- gCGCCGGCGcgagcaccGGCUUCaGGuuGUuGCCg -3'
miRNA:   3'- -GCGGCCGCua------CCGGAG-CCggCGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 25528 0.68 0.155587
Target:  5'- uGuuG-CGGUGGCugaCUCGGCCGCccaGGUCg -3'
miRNA:   3'- gCggCcGCUACCG---GAGCCGGCG---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 18743 0.67 0.182296
Target:  5'- gGCCGGCGGgaagGGauuacaGGCCGaUGGCCu -3'
miRNA:   3'- gCGGCCGCUa---CCggag--CCGGC-GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 21277 0.69 0.136089
Target:  5'- aCGCCGGCGAaGGCg-CGGUacaucaGGCCg -3'
miRNA:   3'- -GCGGCCGCUaCCGgaGCCGgcg---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 33012 0.67 0.189087
Target:  5'- gCGCCGGCGGauUGGUCgaacccaacuacGCCGUaguGGCCg -3'
miRNA:   3'- -GCGGCCGCU--ACCGGagc---------CGGCG---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 29873 0.68 0.151495
Target:  5'- cCGCCGGCGc-GGCUguugUC-GCUGCGGUCg -3'
miRNA:   3'- -GCGGCCGCuaCCGG----AGcCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 19063 0.68 0.1398
Target:  5'- -aCCGGCGAUcaCCU-GGCCGCAGgCa -3'
miRNA:   3'- gcGGCCGCUAccGGAgCCGGCGUCgG- -5'
11941 5' -64.4 NC_003278.1 + 9759 0.68 0.155587
Target:  5'- aGCCGGCGAgcaacaucaGGCagaGGCUGguCAGCCc -3'
miRNA:   3'- gCGGCCGCUa--------CCGgagCCGGC--GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 16884 0.68 0.164071
Target:  5'- aCGCCaucuGCGAagagGGCUUCGaGCCaguccgguGCGGCCg -3'
miRNA:   3'- -GCGGc---CGCUa---CCGGAGC-CGG--------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 23478 0.67 0.177579
Target:  5'- cCGCCGGUGucgucGGCCa-GGUCGCuGaCCa -3'
miRNA:   3'- -GCGGCCGCua---CCGGagCCGGCGuC-GG- -5'
11941 5' -64.4 NC_003278.1 + 14949 0.67 0.182296
Target:  5'- aGCCGGC--UGGCagUGGCUGCGuuGCCc -3'
miRNA:   3'- gCGGCCGcuACCGgaGCCGGCGU--CGG- -5'
11941 5' -64.4 NC_003278.1 + 21594 0.7 0.100872
Target:  5'- gGCCGGCGAcaGCCUgaCGGCCcGCgcugaccaGGCCu -3'
miRNA:   3'- gCGGCCGCUacCGGA--GCCGG-CG--------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 5049 0.7 0.112555
Target:  5'- uGCuCGGCGAUcgcuucgacGGCCUCG-CCGaccuGGCCg -3'
miRNA:   3'- gCG-GCCGCUA---------CCGGAGCcGGCg---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 7446 0.69 0.132469
Target:  5'- cCGCUGGUGGUGGUgUCGuaccaGCgGUAGCg -3'
miRNA:   3'- -GCGGCCGCUACCGgAGC-----CGgCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 9420 0.69 0.136089
Target:  5'- gGCUcacGCGcUGGCCUCGGC-GCAGUUg -3'
miRNA:   3'- gCGGc--CGCuACCGGAGCCGgCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.