miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 18743 0.67 0.182296
Target:  5'- gGCCGGCGGgaagGGauuacaGGCCGaUGGCCu -3'
miRNA:   3'- gCGGCCGCUa---CCggag--CCGGC-GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 23478 0.67 0.177579
Target:  5'- cCGCCGGUGucgucGGCCa-GGUCGCuGaCCa -3'
miRNA:   3'- -GCGGCCGCua---CCGGagCCGGCGuC-GG- -5'
11941 5' -64.4 NC_003278.1 + 31683 0.67 0.177579
Target:  5'- aGCCuGCGGcgccGCCgcccaGGCCGCAGCa -3'
miRNA:   3'- gCGGcCGCUac--CGGag---CCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 7020 0.67 0.177579
Target:  5'- aGCCGGCGG-GGCgcgggguacgCUCGGUCaaccgccagagGCGGUCa -3'
miRNA:   3'- gCGGCCGCUaCCG----------GAGCCGG-----------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 10429 0.67 0.177579
Target:  5'- uCGgCGGCGucca-CUCGGCCaGCAGCUc -3'
miRNA:   3'- -GCgGCCGCuaccgGAGCCGG-CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 21750 0.67 0.17297
Target:  5'- uCGauGGUGAUGGCCUgcGCCGgGGCg -3'
miRNA:   3'- -GCggCCGCUACCGGAgcCGGCgUCGg -5'
11941 5' -64.4 NC_003278.1 + 29254 0.67 0.172515
Target:  5'- cCGCCGGUgcGAUcuucaccGGCagCGGCgCGCAGCUu -3'
miRNA:   3'- -GCGGCCG--CUA-------CCGgaGCCG-GCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 2032 0.68 0.164071
Target:  5'- uGCCgcGGCGcAUGuaCUUGGCCaGCGGCg -3'
miRNA:   3'- gCGG--CCGC-UACcgGAGCCGG-CGUCGg -5'
11941 5' -64.4 NC_003278.1 + 16884 0.68 0.164071
Target:  5'- aCGCCaucuGCGAagagGGCUUCGaGCCaguccgguGCGGCCg -3'
miRNA:   3'- -GCGGc---CGCUa---CCGGAGC-CGG--------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 30044 0.68 0.159778
Target:  5'- -aCCcGCGAgaGCCa-GGCCGCAGCCg -3'
miRNA:   3'- gcGGcCGCUacCGGagCCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 9759 0.68 0.155587
Target:  5'- aGCCGGCGAgcaacaucaGGCagaGGCUGguCAGCCc -3'
miRNA:   3'- gCGGCCGCUa--------CCGgagCCGGC--GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 25528 0.68 0.155587
Target:  5'- uGuuG-CGGUGGCugaCUCGGCCGCccaGGUCg -3'
miRNA:   3'- gCggCcGCUACCG---GAGCCGGCG---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 9985 0.68 0.155173
Target:  5'- cCGCCuGGUGAUauucaucgacaacGGCCg-GGuCCGCAGCa -3'
miRNA:   3'- -GCGG-CCGCUA-------------CCGGagCC-GGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 29873 0.68 0.151495
Target:  5'- cCGCCGGCGc-GGCUguugUC-GCUGCGGUCg -3'
miRNA:   3'- -GCGGCCGCuaCCGG----AGcCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 22955 0.68 0.151495
Target:  5'- gGCCGGUGgcGGCaagaCuGCCaGCGGCCu -3'
miRNA:   3'- gCGGCCGCuaCCGga--GcCGG-CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 8039 0.68 0.147501
Target:  5'- gGCCgaGGCccauGAUGGCgC-CGGCCGUGGCg -3'
miRNA:   3'- gCGG--CCG----CUACCG-GaGCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 31575 0.68 0.143989
Target:  5'- aGCUGGCccacucgacagccuUGGCCuguuggcgaauUCGGCUGCAGCg -3'
miRNA:   3'- gCGGCCGcu------------ACCGG-----------AGCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 13053 0.68 0.143603
Target:  5'- aGCgGGCgcaGAUGGCCUgggaaGGCCuCAGCa -3'
miRNA:   3'- gCGgCCG---CUACCGGAg----CCGGcGUCGg -5'
11941 5' -64.4 NC_003278.1 + 19063 0.68 0.1398
Target:  5'- -aCCGGCGAUcaCCU-GGCCGCAGgCa -3'
miRNA:   3'- gcGGCCGCUAccGGAgCCGGCGUCgG- -5'
11941 5' -64.4 NC_003278.1 + 20046 0.68 0.1398
Target:  5'- cCGCgGGCGAcaUGGaCCUCGGCgacacUGCugacauuGCCu -3'
miRNA:   3'- -GCGgCCGCU--ACC-GGAGCCG-----GCGu------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.