miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11942 5' -49.9 NC_003278.1 + 9757 0.67 0.826493
Target:  5'- -cCGGCGAGCaacaUCaggcAGAGGCugguCAGCCCa -3'
miRNA:   3'- ccGCCGUUCG----AGa---UUUUCGu---GUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 14016 0.67 0.816588
Target:  5'- aGGCGcuCGAGCUC---GAGCACggUCUc -3'
miRNA:   3'- -CCGCc-GUUCGAGauuUUCGUGuuGGG- -5'
11942 5' -49.9 NC_003278.1 + 18647 0.67 0.816588
Target:  5'- -aCGGCAAggaccuGCUC--GAGGCACAGCgCa -3'
miRNA:   3'- ccGCCGUU------CGAGauUUUCGUGUUGgG- -5'
11942 5' -49.9 NC_003278.1 + 28257 0.67 0.81458
Target:  5'- aGGCGGCGGGUUCcuugucgguGGCcgGCGAUCg -3'
miRNA:   3'- -CCGCCGUUCGAGauuu-----UCG--UGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 29277 0.67 0.804407
Target:  5'- aGCGGCGcgcAGCUUgaccagaucauGAAGCuGCAGCUCa -3'
miRNA:   3'- cCGCCGU---UCGAGau---------UUUCG-UGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 8800 0.67 0.803378
Target:  5'- gGGCGGcCAGGgUCUucGGGCcagcgaugccaucgGCGACCa -3'
miRNA:   3'- -CCGCC-GUUCgAGAuuUUCG--------------UGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 32298 0.67 0.791924
Target:  5'- cGGCGcGCAGGCUCUucuucucCGGCUCg -3'
miRNA:   3'- -CCGC-CGUUCGAGAuuuucguGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 31633 0.68 0.785577
Target:  5'- cGGCGGCGccgcaGGCUUcAAccGGGCGCGuCCg -3'
miRNA:   3'- -CCGCCGU-----UCGAGaUU--UUCGUGUuGGg -5'
11942 5' -49.9 NC_003278.1 + 5038 0.68 0.774853
Target:  5'- -uCGGCGAGCagaAGAAGCA-GACCCa -3'
miRNA:   3'- ccGCCGUUCGagaUUUUCGUgUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 20299 0.68 0.773771
Target:  5'- uGGCGGUggugaccgucuccAGGCUCUGGccGUacucGCGGCCg -3'
miRNA:   3'- -CCGCCG-------------UUCGAGAUUuuCG----UGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 6313 0.68 0.768335
Target:  5'- cGGCGGCcacugccccgcaccaGGGCaugGAAGGCGCGaacGCCUa -3'
miRNA:   3'- -CCGCCG---------------UUCGagaUUUUCGUGU---UGGG- -5'
11942 5' -49.9 NC_003278.1 + 30929 0.68 0.763957
Target:  5'- aGCGGUggGCUUggccguuGUACAGgCCg -3'
miRNA:   3'- cCGCCGuuCGAGauuuu--CGUGUUgGG- -5'
11942 5' -49.9 NC_003278.1 + 22994 0.68 0.763957
Target:  5'- cGGcCGGCAGGC----AGAGCagGCAGCCg -3'
miRNA:   3'- -CC-GCCGUUCGagauUUUCG--UGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 10559 0.68 0.762859
Target:  5'- gGGCaGCAcgagggccuGGCUC-GAGGGCGCGgagaaucggcccuGCCCa -3'
miRNA:   3'- -CCGcCGU---------UCGAGaUUUUCGUGU-------------UGGG- -5'
11942 5' -49.9 NC_003278.1 + 34012 0.68 0.757343
Target:  5'- uGCGGCAgaucuuccGGCUgUAucgaacucggaaccgGAGcgcGCACGACCCa -3'
miRNA:   3'- cCGCCGU--------UCGAgAU---------------UUU---CGUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 18297 0.68 0.752905
Target:  5'- gGGCGGCAugaacGGCcCggucAAGGC-CGACCUa -3'
miRNA:   3'- -CCGCCGU-----UCGaGau--UUUCGuGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 12339 0.68 0.752905
Target:  5'- cGGCGGCGccCUCgcccgcuuGGCACAcAUCCg -3'
miRNA:   3'- -CCGCCGUucGAGauuu----UCGUGU-UGGG- -5'
11942 5' -49.9 NC_003278.1 + 31863 0.68 0.751791
Target:  5'- cGGCGGgAGGCUCcguuccaUGGAAGCGgAugUa -3'
miRNA:   3'- -CCGCCgUUCGAG-------AUUUUCGUgUugGg -5'
11942 5' -49.9 NC_003278.1 + 14133 0.68 0.750677
Target:  5'- cGGCGGCcuGCUCaccgacaucGGCGCGGCa- -3'
miRNA:   3'- -CCGCCGuuCGAGauuu-----UCGUGUUGgg -5'
11942 5' -49.9 NC_003278.1 + 23292 0.68 0.741709
Target:  5'- cGGCcccuGGCGAGCgcguagCUGAGcguGGCGCuGCCa -3'
miRNA:   3'- -CCG----CCGUUCGa-----GAUUU---UCGUGuUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.