miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11943 3' -55.5 NC_003278.1 + 25491 0.67 0.461312
Target:  5'- aUGGACaACCUgCACCagagaaugcUGGAcGCGUUGCa -3'
miRNA:   3'- cACCUG-UGGAaGUGG---------ACCU-CGCAGUG- -5'
11943 3' -55.5 NC_003278.1 + 22474 0.68 0.440836
Target:  5'- -cGGaACACCggCACC-GGAuagccgGCGUCGCg -3'
miRNA:   3'- caCC-UGUGGaaGUGGaCCU------CGCAGUG- -5'
11943 3' -55.5 NC_003278.1 + 9143 0.68 0.433792
Target:  5'- cUGGGCuacgucagcgugcagGCCUUCGCCgaguccaUGGGGCGUaGCg -3'
miRNA:   3'- cACCUG---------------UGGAAGUGG-------ACCUCGCAgUG- -5'
11943 3' -55.5 NC_003278.1 + 18602 0.68 0.408214
Target:  5'- gGUGGugAUCUugugcucggugucuUCGCCgGGcugGGCGUCACc -3'
miRNA:   3'- -CACCugUGGA--------------AGUGGaCC---UCGCAGUG- -5'
11943 3' -55.5 NC_003278.1 + 16785 0.69 0.405324
Target:  5'- -cGGuACGCCUgcagCGCCUGGuacugcucagugcugAGCGUCGu -3'
miRNA:   3'- caCC-UGUGGAa---GUGGACC---------------UCGCAGUg -5'
11943 3' -55.5 NC_003278.1 + 14007 0.69 0.392008
Target:  5'- --cGACACCUgaccCGCCUGGAccuGCGcaUCACg -3'
miRNA:   3'- cacCUGUGGAa---GUGGACCU---CGC--AGUG- -5'
11943 3' -55.5 NC_003278.1 + 22053 0.7 0.32158
Target:  5'- cUGGGCACCgaugcggcugCugCUGGcGUGUCGCc -3'
miRNA:   3'- cACCUGUGGaa--------GugGACCuCGCAGUG- -5'
11943 3' -55.5 NC_003278.1 + 1403 0.71 0.275259
Target:  5'- uUGGAgACgCUgauuacaaGCCUGGAGCGUCGa -3'
miRNA:   3'- cACCUgUG-GAag------UGGACCUCGCAGUg -5'
11943 3' -55.5 NC_003278.1 + 10771 0.73 0.210131
Target:  5'- -aGGAaACCgugaUCGCCUGG-GCGUCGCc -3'
miRNA:   3'- caCCUgUGGa---AGUGGACCuCGCAGUG- -5'
11943 3' -55.5 NC_003278.1 + 634 1.09 0.000455
Target:  5'- aGUGGACACCUUCACCUGGAGCGUCACu -3'
miRNA:   3'- -CACCUGUGGAAGUGGACCUCGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.