miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11945 3' -63.5 NC_003278.1 + 7895 0.65 0.253117
Target:  5'- gGCCaggggggagggugGGGCCGuGGUCGG-CCAGgCCGuGg -3'
miRNA:   3'- -CGGa------------CCCGGU-CCAGCCaGGUC-GGC-Cg -5'
11945 3' -63.5 NC_003278.1 + 21991 0.66 0.249325
Target:  5'- cGCCaGcagcaGCCGcaUCGGUgcCCAGCCGGCg -3'
miRNA:   3'- -CGGaCc----CGGUccAGCCA--GGUCGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 30863 0.66 0.249325
Target:  5'- cGCgCUGGGCgaucggcagCAGGcguuucagcgCGGUgaGGCCGGCu -3'
miRNA:   3'- -CG-GACCCG---------GUCCa---------GCCAggUCGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 33952 0.66 0.243109
Target:  5'- gGCCUGGcugucaccccaGCgAGGUCGGauguggguuUCCacgcGGCUGGUg -3'
miRNA:   3'- -CGGACC-----------CGgUCCAGCC---------AGG----UCGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 7464 0.66 0.237022
Target:  5'- uCCUGGGCCuuGUCGuugCC-GCUGGUg -3'
miRNA:   3'- cGGACCCGGucCAGCca-GGuCGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 33132 0.66 0.236421
Target:  5'- gGCCUGuGCCAGGUgccauccagcgacUGGaugaugcaggUCAGCCGGUc -3'
miRNA:   3'- -CGGACcCGGUCCA-------------GCCa---------GGUCGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 3995 0.66 0.225232
Target:  5'- aGCUUGaGcGCCAGGcgCGGaUCCAGCgcuaccagggCGGUg -3'
miRNA:   3'- -CGGAC-C-CGGUCCa-GCC-AGGUCG----------GCCG- -5'
11945 3' -63.5 NC_003278.1 + 16867 0.66 0.225232
Target:  5'- gGCUUcGaGCCAGucCGGUgCGGCCGGCc -3'
miRNA:   3'- -CGGAcC-CGGUCcaGCCAgGUCGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 17602 0.66 0.225232
Target:  5'- uGCCUGGGCaacagcuggcgCAGGcaCGGUCUGGUugaccaCGGUg -3'
miRNA:   3'- -CGGACCCG-----------GUCCa-GCCAGGUCG------GCCG- -5'
11945 3' -63.5 NC_003278.1 + 22948 0.66 0.225232
Target:  5'- uGCCUGcGGCCGGuGgCGGcaagacugCCAGCggccUGGCg -3'
miRNA:   3'- -CGGAC-CCGGUC-CaGCCa-------GGUCG----GCCG- -5'
11945 3' -63.5 NC_003278.1 + 21302 0.66 0.225232
Target:  5'- uCCaGGGCCuGGUgaaCGG-CCugcucGCCGGCu -3'
miRNA:   3'- cGGaCCCGGuCCA---GCCaGGu----CGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 31625 0.66 0.225232
Target:  5'- gGCCUGGGCggcggcgccgCAGGcuucaaccgggCGcGUCCgcgGGUCGGCa -3'
miRNA:   3'- -CGGACCCG----------GUCCa----------GC-CAGG---UCGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 4889 0.66 0.219526
Target:  5'- cGCUgaacagGGuGUCGGGaUUGGUCUugcGGCUGGCg -3'
miRNA:   3'- -CGGa-----CC-CGGUCC-AGCCAGG---UCGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 5584 0.67 0.208484
Target:  5'- cGCCUGGGCCAaGUUccccgaguuccaGGcCCuGCUGcGCg -3'
miRNA:   3'- -CGGACCCGGUcCAG------------CCaGGuCGGC-CG- -5'
11945 3' -63.5 NC_003278.1 + 31174 0.67 0.208484
Target:  5'- -gCUGGGCCAGGgCGGcCUGGaccauguucUCGGCc -3'
miRNA:   3'- cgGACCCGGUCCaGCCaGGUC---------GGCCG- -5'
11945 3' -63.5 NC_003278.1 + 19049 0.67 0.203144
Target:  5'- gGCCgcaGGCaaggAGGUCGGccgggUCCAuGCCGGUn -3'
miRNA:   3'- -CGGac-CCGg---UCCAGCC-----AGGU-CGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 21242 0.67 0.197924
Target:  5'- uCCUGGGCUaccuGGGcaUCGa-CCuGCCGGCg -3'
miRNA:   3'- cGGACCCGG----UCC--AGCcaGGuCGGCCG- -5'
11945 3' -63.5 NC_003278.1 + 19137 0.67 0.192821
Target:  5'- cGUCacGGCCAGGUCGG-CCA--UGGCg -3'
miRNA:   3'- -CGGacCCGGUCCAGCCaGGUcgGCCG- -5'
11945 3' -63.5 NC_003278.1 + 17313 0.67 0.187834
Target:  5'- cGCUUGGGCguGGuaccgcgcauccUCGG-CguGCCGGg -3'
miRNA:   3'- -CGGACCCGguCC------------AGCCaGguCGGCCg -5'
11945 3' -63.5 NC_003278.1 + 9088 0.67 0.187834
Target:  5'- gGCgCUGGuGCUcGG-CGGUgCcGCCGGCa -3'
miRNA:   3'- -CG-GACC-CGGuCCaGCCAgGuCGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.