miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11945 5' -53.3 NC_003278.1 + 34239 0.66 0.73081
Target:  5'- gGGCCGcUCcaGAUCAUgaauuccGCCAGGUu -3'
miRNA:   3'- gCCGGCaAGaaCUAGUGac-----UGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 5335 0.66 0.73081
Target:  5'- -cGCCGUugagCUUGGcgaGCUGcGCCAGGUa -3'
miRNA:   3'- gcCGGCAa---GAACUag-UGAC-UGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 10494 0.66 0.697305
Target:  5'- aGGCUGUcagc---CAUUGGCCGGGCg -3'
miRNA:   3'- gCCGGCAagaacuaGUGACUGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 13723 0.66 0.685982
Target:  5'- uGGgCGUUCUccgucGAUCGCUGggacagcaccugGCCGGaGCg -3'
miRNA:   3'- gCCgGCAAGAa----CUAGUGAC------------UGGUC-CG- -5'
11945 5' -53.3 NC_003278.1 + 5056 0.67 0.648286
Target:  5'- gCGGCUGUgcUCggcGAUCGCUucgacggccucgccGACCuGGCc -3'
miRNA:   3'- -GCCGGCA--AGaa-CUAGUGA--------------CUGGuCCG- -5'
11945 5' -53.3 NC_003278.1 + 7721 0.67 0.640253
Target:  5'- uGGCCaccg-UGAUCGCUaACCAGaGCg -3'
miRNA:   3'- gCCGGcaagaACUAGUGAcUGGUC-CG- -5'
11945 5' -53.3 NC_003278.1 + 20305 0.67 0.640253
Target:  5'- gGGCCGUggcggUGGUgACcGucuCCAGGCu -3'
miRNA:   3'- gCCGGCAaga--ACUAgUGaCu--GGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 8319 0.67 0.617292
Target:  5'- -uGCCGUUCcgUUGAUCGCcGcCCuGGCc -3'
miRNA:   3'- gcCGGCAAG--AACUAGUGaCuGGuCCG- -5'
11945 5' -53.3 NC_003278.1 + 10404 0.67 0.617292
Target:  5'- aGGCCGUcaugCUcGAgacgcCGCaGAUCAGGCg -3'
miRNA:   3'- gCCGGCAa---GAaCUa----GUGaCUGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 18443 0.68 0.605828
Target:  5'- uGcGCCGUacugCUUGAggGCUGucagauCCAGGCc -3'
miRNA:   3'- gC-CGGCAa---GAACUagUGACu-----GGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 10050 0.68 0.605828
Target:  5'- cCGGCCGUUgUcGAUgAauaucACCAGGCg -3'
miRNA:   3'- -GCCGGCAAgAaCUAgUgac--UGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 2609 0.68 0.594388
Target:  5'- cCGGCCGUgauggUCUUGcggauagccAUCAgCgccugGGCCAGGUc -3'
miRNA:   3'- -GCCGGCA-----AGAAC---------UAGU-Ga----CUGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 32443 0.69 0.531232
Target:  5'- aGGUCGUUCagGcugcgccaGUCGCUGccggcucgcaccaguGCCAGGCg -3'
miRNA:   3'- gCCGGCAAGaaC--------UAGUGAC---------------UGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 5966 0.7 0.483368
Target:  5'- gCGGCCGag---GAUCACc-ACCAGGCc -3'
miRNA:   3'- -GCCGGCaagaaCUAGUGacUGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 29277 0.71 0.421683
Target:  5'- aGGCgcUUCUUGAacUCGCUGGCCgccgcgaccuGGGCa -3'
miRNA:   3'- gCCGgcAAGAACU--AGUGACUGG----------UCCG- -5'
11945 5' -53.3 NC_003278.1 + 32757 0.71 0.421683
Target:  5'- gGGCCGUcCca-GUCGgUGACCGGGUa -3'
miRNA:   3'- gCCGGCAaGaacUAGUgACUGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 23255 0.71 0.411868
Target:  5'- cCGGCCGgaCcUGAUCccggaACUGACCuacacccugcaAGGCg -3'
miRNA:   3'- -GCCGGCaaGaACUAG-----UGACUGG-----------UCCG- -5'
11945 5' -53.3 NC_003278.1 + 21595 0.75 0.254235
Target:  5'- aGGCCGgcgacagCcUGAcggcccgCGCUGACCAGGCc -3'
miRNA:   3'- gCCGGCaa-----GaACUa------GUGACUGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 23466 0.75 0.240878
Target:  5'- uCGGCCa-----GGUCGCUGACCAGGUc -3'
miRNA:   3'- -GCCGGcaagaaCUAGUGACUGGUCCG- -5'
11945 5' -53.3 NC_003278.1 + 3059 0.83 0.065412
Target:  5'- gCGGCCGUUCggUGAUCGCcaggugUGGCUGGGCu -3'
miRNA:   3'- -GCCGGCAAGa-ACUAGUG------ACUGGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.