miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 3' -56.1 NC_003278.1 + 19741 0.66 0.508025
Target:  5'- cUUGGgucaGGCGCUCCugcuGCugGCuGAGg -3'
miRNA:   3'- uAACUa---CCGCGAGGu---CGugCGcCUUg -5'
11946 3' -56.1 NC_003278.1 + 32664 0.66 0.47573
Target:  5'- -aUGAUGGCGCccgaggugucggUCCAGCgGCGCa---- -3'
miRNA:   3'- uaACUACCGCG------------AGGUCG-UGCGccuug -5'
11946 3' -56.1 NC_003278.1 + 20934 0.66 0.47573
Target:  5'- --cGAUGGUGC-CgAGCAUgaaGCGGAcuGCg -3'
miRNA:   3'- uaaCUACCGCGaGgUCGUG---CGCCU--UG- -5'
11946 3' -56.1 NC_003278.1 + 3841 0.66 0.47573
Target:  5'- -cUGAUGucguuGCGCUUCGGCuuGCGCuuGGGACc -3'
miRNA:   3'- uaACUAC-----CGCGAGGUCG--UGCG--CCUUG- -5'
11946 3' -56.1 NC_003278.1 + 30191 0.67 0.424313
Target:  5'- --cGGaaGCaCUCCAGCACGCGGGc- -3'
miRNA:   3'- uaaCUacCGcGAGGUCGUGCGCCUug -5'
11946 3' -56.1 NC_003278.1 + 8007 0.68 0.395102
Target:  5'- -gUGGUGGUGaggUCAGcCAUGCGGggUg -3'
miRNA:   3'- uaACUACCGCga-GGUC-GUGCGCCuuG- -5'
11946 3' -56.1 NC_003278.1 + 2986 0.68 0.358235
Target:  5'- -gUGGUGGCGcCUCCGGCgguAC-CGGGcgGCa -3'
miRNA:   3'- uaACUACCGC-GAGGUCG---UGcGCCU--UG- -5'
11946 3' -56.1 NC_003278.1 + 32969 0.68 0.349403
Target:  5'- --cGccGGCGCggugucggCCAGUGCGCGGcACg -3'
miRNA:   3'- uaaCuaCCGCGa-------GGUCGUGCGCCuUG- -5'
11946 3' -56.1 NC_003278.1 + 13062 0.68 0.349403
Target:  5'- --aGAUGGCcugggaagGCcUCAGCAcCGCGGGACc -3'
miRNA:   3'- uaaCUACCG--------CGaGGUCGU-GCGCCUUG- -5'
11946 3' -56.1 NC_003278.1 + 26050 0.69 0.332208
Target:  5'- -----gGGCGUcgCCAGCcUGCGGAGCu -3'
miRNA:   3'- uaacuaCCGCGa-GGUCGuGCGCCUUG- -5'
11946 3' -56.1 NC_003278.1 + 32882 0.7 0.299708
Target:  5'- -gUGcGUGGCGgUCCcaaGGCACgauGCGGAACu -3'
miRNA:   3'- uaAC-UACCGCgAGG---UCGUG---CGCCUUG- -5'
11946 3' -56.1 NC_003278.1 + 32616 0.71 0.2422
Target:  5'- uAUUGcagGGCGUuugCCGGCGCGCGcGGGCc -3'
miRNA:   3'- -UAACua-CCGCGa--GGUCGUGCGC-CUUG- -5'
11946 3' -56.1 NC_003278.1 + 9802 0.73 0.183555
Target:  5'- -cUGAUGGUaagcggccGCUCCGGUGauaGCGGGGCg -3'
miRNA:   3'- uaACUACCG--------CGAGGUCGUg--CGCCUUG- -5'
11946 3' -56.1 NC_003278.1 + 29565 0.74 0.159211
Target:  5'- -cUGGUGGCGCUggcauucugguUCGGCucgcuguuCGCGGAGCa -3'
miRNA:   3'- uaACUACCGCGA-----------GGUCGu-------GCGCCUUG- -5'
11946 3' -56.1 NC_003278.1 + 2894 1.07 0.000482
Target:  5'- aAUUGAUGGCGCUCCAGCACGCGGAACu -3'
miRNA:   3'- -UAACUACCGCGAGGUCGUGCGCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.