Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11946 | 3' | -56.1 | NC_003278.1 | + | 2894 | 1.07 | 0.000482 |
Target: 5'- aAUUGAUGGCGCUCCAGCACGCGGAACu -3' miRNA: 3'- -UAACUACCGCGAGGUCGUGCGCCUUG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 2986 | 0.68 | 0.358235 |
Target: 5'- -gUGGUGGCGcCUCCGGCgguAC-CGGGcgGCa -3' miRNA: 3'- uaACUACCGC-GAGGUCG---UGcGCCU--UG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 3841 | 0.66 | 0.47573 |
Target: 5'- -cUGAUGucguuGCGCUUCGGCuuGCGCuuGGGACc -3' miRNA: 3'- uaACUAC-----CGCGAGGUCG--UGCG--CCUUG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 8007 | 0.68 | 0.395102 |
Target: 5'- -gUGGUGGUGaggUCAGcCAUGCGGggUg -3' miRNA: 3'- uaACUACCGCga-GGUC-GUGCGCCuuG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 9802 | 0.73 | 0.183555 |
Target: 5'- -cUGAUGGUaagcggccGCUCCGGUGauaGCGGGGCg -3' miRNA: 3'- uaACUACCG--------CGAGGUCGUg--CGCCUUG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 13062 | 0.68 | 0.349403 |
Target: 5'- --aGAUGGCcugggaagGCcUCAGCAcCGCGGGACc -3' miRNA: 3'- uaaCUACCG--------CGaGGUCGU-GCGCCUUG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 19741 | 0.66 | 0.508025 |
Target: 5'- cUUGGgucaGGCGCUCCugcuGCugGCuGAGg -3' miRNA: 3'- uAACUa---CCGCGAGGu---CGugCGcCUUg -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 20934 | 0.66 | 0.47573 |
Target: 5'- --cGAUGGUGC-CgAGCAUgaaGCGGAcuGCg -3' miRNA: 3'- uaaCUACCGCGaGgUCGUG---CGCCU--UG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 26050 | 0.69 | 0.332208 |
Target: 5'- -----gGGCGUcgCCAGCcUGCGGAGCu -3' miRNA: 3'- uaacuaCCGCGa-GGUCGuGCGCCUUG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 29565 | 0.74 | 0.159211 |
Target: 5'- -cUGGUGGCGCUggcauucugguUCGGCucgcuguuCGCGGAGCa -3' miRNA: 3'- uaACUACCGCGA-----------GGUCGu-------GCGCCUUG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 30191 | 0.67 | 0.424313 |
Target: 5'- --cGGaaGCaCUCCAGCACGCGGGc- -3' miRNA: 3'- uaaCUacCGcGAGGUCGUGCGCCUug -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 32616 | 0.71 | 0.2422 |
Target: 5'- uAUUGcagGGCGUuugCCGGCGCGCGcGGGCc -3' miRNA: 3'- -UAACua-CCGCGa--GGUCGUGCGC-CUUG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 32664 | 0.66 | 0.47573 |
Target: 5'- -aUGAUGGCGCccgaggugucggUCCAGCgGCGCa---- -3' miRNA: 3'- uaACUACCGCG------------AGGUCG-UGCGccuug -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 32882 | 0.7 | 0.299708 |
Target: 5'- -gUGcGUGGCGgUCCcaaGGCACgauGCGGAACu -3' miRNA: 3'- uaAC-UACCGCgAGG---UCGUG---CGCCUUG- -5' |
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11946 | 3' | -56.1 | NC_003278.1 | + | 32969 | 0.68 | 0.349403 |
Target: 5'- --cGccGGCGCggugucggCCAGUGCGCGGcACg -3' miRNA: 3'- uaaCuaCCGCGa-------GGUCGUGCGCCuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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