miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 14691 0.7 0.144594
Target:  5'- -aGCCuCCGGcguGGGUGCCGgCACCuACCg -3'
miRNA:   3'- caUGGcGGCC---UCCGCGGUgGUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 14761 0.75 0.066028
Target:  5'- -gACCGCaCGGuAGGUGCCGgCACCcacGCCg -3'
miRNA:   3'- caUGGCG-GCC-UCCGCGGUgGUGG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 14872 0.68 0.199572
Target:  5'- -cGCCGUCGGGGuaGUgACCGCCucGCUg -3'
miRNA:   3'- caUGGCGGCCUCcgCGgUGGUGG--UGG- -5'
11946 5' -61.6 NC_003278.1 + 15000 0.67 0.271882
Target:  5'- ---aCGCUGGccaacuccGGCGUCACCGCCgggACCu -3'
miRNA:   3'- caugGCGGCCu-------CCGCGGUGGUGG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 15142 0.67 0.271882
Target:  5'- cUGCUGCCaGAGGCGgUACCGgCAa- -3'
miRNA:   3'- cAUGGCGGcCUCCGCgGUGGUgGUgg -5'
11946 5' -61.6 NC_003278.1 + 15416 0.73 0.100921
Target:  5'- cUGCUGCCGucaG-GCCACCGCCACCg -3'
miRNA:   3'- cAUGGCGGCcucCgCGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 15917 0.77 0.048163
Target:  5'- -cGCCGCCGGcggucuguacuGGCGCUGCCGCUACa -3'
miRNA:   3'- caUGGCGGCCu----------CCGCGGUGGUGGUGg -5'
11946 5' -61.6 NC_003278.1 + 15964 0.72 0.116013
Target:  5'- -gACCGCCGGcGGCGUaGCCACgAUa -3'
miRNA:   3'- caUGGCGGCCuCCGCGgUGGUGgUGg -5'
11946 5' -61.6 NC_003278.1 + 16571 0.76 0.054036
Target:  5'- -gACaGCCGGucGCcacGCCACCACCACCu -3'
miRNA:   3'- caUGgCGGCCucCG---CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 16727 0.71 0.136897
Target:  5'- aGUACCaggcGCUGcAGGCG-UACCGCCGCCa -3'
miRNA:   3'- -CAUGG----CGGCcUCCGCgGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 17048 0.75 0.067939
Target:  5'- -cACCGCCGaAGaCGCCgacGCCACCGCCu -3'
miRNA:   3'- caUGGCGGCcUCcGCGG---UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 17168 0.67 0.245679
Target:  5'- -aAUCGCCGaccAGGCcaaCGCCGCCACUg -3'
miRNA:   3'- caUGGCGGCc--UCCGcg-GUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 19490 0.67 0.245679
Target:  5'- -gGuuGCCGGcGGCgGCCAUCugCugaGCCa -3'
miRNA:   3'- caUggCGGCCuCCG-CGGUGGugG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 19808 0.67 0.25851
Target:  5'- cGUGCCGCCaugccGGUGCCgGCCAgCGCg -3'
miRNA:   3'- -CAUGGCGGccu--CCGCGG-UGGUgGUGg -5'
11946 5' -61.6 NC_003278.1 + 20229 0.71 0.136522
Target:  5'- aGUACgGCCagagccuGGAGaCgGUCACCACCGCCa -3'
miRNA:   3'- -CAUGgCGG-------CCUCcG-CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21053 0.66 0.278774
Target:  5'- uUGCCGCCgucguGGcGGUGCUgGCCGgCGCCg -3'
miRNA:   3'- cAUGGCGG-----CCuCCGCGG-UGGUgGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21359 0.67 0.252027
Target:  5'- -aGCgCGUCGGcGGCGCCGCgAUCgACUg -3'
miRNA:   3'- caUG-GCGGCCuCCGCGGUGgUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 21667 0.7 0.156882
Target:  5'- gGUGCC-CUGGugcucGGCGCCAgCGCC-CCg -3'
miRNA:   3'- -CAUGGcGGCCu----CCGCGGUgGUGGuGG- -5'
11946 5' -61.6 NC_003278.1 + 21734 0.68 0.221606
Target:  5'- ---gCGCCGG-GGCGCUggcGCCGagCACCa -3'
miRNA:   3'- caugGCGGCCuCCGCGG---UGGUg-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 22109 0.66 0.278774
Target:  5'- -aGCaCGCCGGgcAGGgugaucgcguCGUCGCCGCgACCg -3'
miRNA:   3'- caUG-GCGGCC--UCC----------GCGGUGGUGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.