Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11946 | 5' | -61.6 | NC_003278.1 | + | 16727 | 0.71 | 0.136897 |
Target: 5'- aGUACCaggcGCUGcAGGCG-UACCGCCGCCa -3' miRNA: 3'- -CAUGG----CGGCcUCCGCgGUGGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 20229 | 0.71 | 0.136522 |
Target: 5'- aGUACgGCCagagccuGGAGaCgGUCACCACCGCCa -3' miRNA: 3'- -CAUGgCGG-------CCUCcG-CGGUGGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 33206 | 0.71 | 0.126055 |
Target: 5'- gGUuCCGCCGGcuGCgGCCgagGCCAUCGCCg -3' miRNA: 3'- -CAuGGCGGCCucCG-CGG---UGGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 23166 | 0.71 | 0.122283 |
Target: 5'- -gACCGCCaGAGcgcccugcGCGCCGCCcgcgccgaguggaACCGCCu -3' miRNA: 3'- caUGGCGGcCUC--------CGCGGUGG-------------UGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 29826 | 0.72 | 0.109739 |
Target: 5'- -aGCCgcGCCGGcGGCGCCGCCAaguCCu -3' miRNA: 3'- caUGG--CGGCCuCCGCGGUGGUgguGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 23008 | 0.73 | 0.092774 |
Target: 5'- --cCCGCCaGGAuGGCGaCCAgCACCGCUa -3' miRNA: 3'- cauGGCGG-CCU-CCGC-GGUgGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 7382 | 0.74 | 0.085254 |
Target: 5'- cUACCGCUGGua-CGaCACCACCACCa -3' miRNA: 3'- cAUGGCGGCCuccGCgGUGGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 22890 | 0.67 | 0.25851 |
Target: 5'- -aGCUGCaggauCGGcAGGC-CCGCCAgCGCCg -3' miRNA: 3'- caUGGCG-----GCC-UCCGcGGUGGUgGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 19490 | 0.67 | 0.245679 |
Target: 5'- -gGuuGCCGGcGGCgGCCAUCugCugaGCCa -3' miRNA: 3'- caUggCGGCCuCCG-CGGUGGugG---UGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 5234 | 0.67 | 0.245679 |
Target: 5'- -aGCaGUCGGucaGGGCGaCACUGCCGCCa -3' miRNA: 3'- caUGgCGGCC---UCCGCgGUGGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 12400 | 0.67 | 0.239465 |
Target: 5'- uGUGCCaaGCgGGcgaGGGCGCCGCCGgUAUg -3' miRNA: 3'- -CAUGG--CGgCC---UCCGCGGUGGUgGUGg -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 13520 | 0.68 | 0.233382 |
Target: 5'- -cGCaCGCCuuccacguGGAGG-GCCGCaugCACCGCCg -3' miRNA: 3'- caUG-GCGG--------CCUCCgCGGUG---GUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 19808 | 0.67 | 0.25851 |
Target: 5'- cGUGCCGCCaugccGGUGCCgGCCAgCGCg -3' miRNA: 3'- -CAUGGCGGccu--CCGCGG-UGGUgGUGg -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 8113 | 0.67 | 0.25851 |
Target: 5'- cGUGCCGgUGGccagccAGGCGCCgagcagggcACCgaacagcauGCCGCCg -3' miRNA: 3'- -CAUGGCgGCC------UCCGCGG---------UGG---------UGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 29286 | 0.67 | 0.263128 |
Target: 5'- ---aCGCCGaGcAGGCGCUucuugaacucgcugGCCGCCGCg -3' miRNA: 3'- caugGCGGC-C-UCCGCGG--------------UGGUGGUGg -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 32361 | 0.66 | 0.278774 |
Target: 5'- gGUGCaucggGCCGGcGGCGUCGaUAUCGCCg -3' miRNA: 3'- -CAUGg----CGGCCuCCGCGGUgGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 22109 | 0.66 | 0.278774 |
Target: 5'- -aGCaCGCCGGgcAGGgugaucgcguCGUCGCCGCgACCg -3' miRNA: 3'- caUG-GCGGCC--UCC----------GCGGUGGUGgUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 1128 | 0.66 | 0.292974 |
Target: 5'- -cGCUGCUauGGaAGGUGCCugugGCUugCGCCa -3' miRNA: 3'- caUGGCGG--CC-UCCGCGG----UGGugGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 34585 | 0.66 | 0.300284 |
Target: 5'- -cGCCGCauuccuGAGGUgGCCauGCCACCAgCCg -3' miRNA: 3'- caUGGCGgc----CUCCG-CGG--UGGUGGU-GG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 13264 | 0.77 | 0.048163 |
Target: 5'- gGU-CCGCCGG-GGCGCUGCCGuuGCCc -3' miRNA: 3'- -CAuGGCGGCCuCCGCGGUGGUggUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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