miRNA display CGI


Results 61 - 80 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 2109 0.74 0.079885
Target:  5'- aUGCCGCUGcAGGCGCCGCUggccaaguacaugcGCCGCg -3'
miRNA:   3'- cAUGGCGGCcUCCGCGGUGG--------------UGGUGg -5'
11946 5' -61.6 NC_003278.1 + 14285 0.75 0.071921
Target:  5'- cGUcUCGCCGGGcGCGCCGCCGgcgUCACCg -3'
miRNA:   3'- -CAuGGCGGCCUcCGCGGUGGU---GGUGG- -5'
11946 5' -61.6 NC_003278.1 + 14761 0.75 0.066028
Target:  5'- -gACCGCaCGGuAGGUGCCGgCACCcacGCCg -3'
miRNA:   3'- caUGGCG-GCC-UCCGCGGUgGUGG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 14872 0.68 0.199572
Target:  5'- -cGCCGUCGGGGuaGUgACCGCCucGCUg -3'
miRNA:   3'- caUGGCGGCCUCcgCGgUGGUGG--UGG- -5'
11946 5' -61.6 NC_003278.1 + 26647 0.68 0.20979
Target:  5'- cGU-CCGCCaGGguAGGCGCCgaugaucgcgcugACCACCuggcGCCg -3'
miRNA:   3'- -CAuGGCGG-CC--UCCGCGG-------------UGGUGG----UGG- -5'
11946 5' -61.6 NC_003278.1 + 34585 0.66 0.300284
Target:  5'- -cGCCGCauuccuGAGGUgGCCauGCCACCAgCCg -3'
miRNA:   3'- caUGGCGgc----CUCCG-CGG--UGGUGGU-GG- -5'
11946 5' -61.6 NC_003278.1 + 1128 0.66 0.292974
Target:  5'- -cGCUGCUauGGaAGGUGCCugugGCUugCGCCa -3'
miRNA:   3'- caUGGCGG--CC-UCCGCGG----UGGugGUGG- -5'
11946 5' -61.6 NC_003278.1 + 22109 0.66 0.278774
Target:  5'- -aGCaCGCCGGgcAGGgugaucgcguCGUCGCCGCgACCg -3'
miRNA:   3'- caUG-GCGGCC--UCC----------GCGGUGGUGgUGG- -5'
11946 5' -61.6 NC_003278.1 + 32361 0.66 0.278774
Target:  5'- gGUGCaucggGCCGGcGGCGUCGaUAUCGCCg -3'
miRNA:   3'- -CAUGg----CGGCCuCCGCGGUgGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 29286 0.67 0.263128
Target:  5'- ---aCGCCGaGcAGGCGCUucuugaacucgcugGCCGCCGCg -3'
miRNA:   3'- caugGCGGC-C-UCCGCGG--------------UGGUGGUGg -5'
11946 5' -61.6 NC_003278.1 + 8113 0.67 0.25851
Target:  5'- cGUGCCGgUGGccagccAGGCGCCgagcagggcACCgaacagcauGCCGCCg -3'
miRNA:   3'- -CAUGGCgGCC------UCCGCGG---------UGG---------UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 19808 0.67 0.25851
Target:  5'- cGUGCCGCCaugccGGUGCCgGCCAgCGCg -3'
miRNA:   3'- -CAUGGCGGccu--CCGCGG-UGGUgGUGg -5'
11946 5' -61.6 NC_003278.1 + 22890 0.67 0.25851
Target:  5'- -aGCUGCaggauCGGcAGGC-CCGCCAgCGCCg -3'
miRNA:   3'- caUGGCG-----GCC-UCCGcGGUGGUgGUGG- -5'
11946 5' -61.6 NC_003278.1 + 19490 0.67 0.245679
Target:  5'- -gGuuGCCGGcGGCgGCCAUCugCugaGCCa -3'
miRNA:   3'- caUggCGGCCuCCG-CGGUGGugG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 5234 0.67 0.245679
Target:  5'- -aGCaGUCGGucaGGGCGaCACUGCCGCCa -3'
miRNA:   3'- caUGgCGGCC---UCCGCgGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 12400 0.67 0.239465
Target:  5'- uGUGCCaaGCgGGcgaGGGCGCCGCCGgUAUg -3'
miRNA:   3'- -CAUGG--CGgCC---UCCGCGGUGGUgGUGg -5'
11946 5' -61.6 NC_003278.1 + 13520 0.68 0.233382
Target:  5'- -cGCaCGCCuuccacguGGAGG-GCCGCaugCACCGCCg -3'
miRNA:   3'- caUG-GCGG--------CCUCCgCGGUG---GUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6375 0.68 0.22743
Target:  5'- aUGCC-CUGGugcgGGGCaGUgGCCGCCGCCu -3'
miRNA:   3'- cAUGGcGGCC----UCCG-CGgUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21734 0.68 0.221606
Target:  5'- ---gCGCCGG-GGCGCUggcGCCGagCACCa -3'
miRNA:   3'- caugGCGGCCuCCGCGG---UGGUg-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 14690 0.68 0.215911
Target:  5'- -cACCGCCGaccAGGCcguuGCCGgCCAgCACCu -3'
miRNA:   3'- caUGGCGGCc--UCCG----CGGU-GGUgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.