Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11946 | 5' | -61.6 | NC_003278.1 | + | 5234 | 0.67 | 0.245679 |
Target: 5'- -aGCaGUCGGucaGGGCGaCACUGCCGCCa -3' miRNA: 3'- caUGgCGGCC---UCCGCgGUGGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 22109 | 0.66 | 0.278774 |
Target: 5'- -aGCaCGCCGGgcAGGgugaucgcguCGUCGCCGCgACCg -3' miRNA: 3'- caUG-GCGGCC--UCC----------GCGGUGGUGgUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 13264 | 0.77 | 0.048163 |
Target: 5'- gGU-CCGCCGG-GGCGCUGCCGuuGCCc -3' miRNA: 3'- -CAuGGCGGCCuCCGCGGUGGUggUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 610 | 0.73 | 0.098133 |
Target: 5'- cGUACUGCCccaacaGGGUGCUACCGCCGuCCu -3' miRNA: 3'- -CAUGGCGGcc----UCCGCGGUGGUGGU-GG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 14872 | 0.68 | 0.199572 |
Target: 5'- -cGCCGUCGGGGuaGUgACCGCCucGCUg -3' miRNA: 3'- caUGGCGGCCUCcgCGgUGGUGG--UGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 1128 | 0.66 | 0.292974 |
Target: 5'- -cGCUGCUauGGaAGGUGCCugugGCUugCGCCa -3' miRNA: 3'- caUGGCGG--CC-UCCGCGG----UGGugGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 15416 | 0.73 | 0.100921 |
Target: 5'- cUGCUGCCGucaG-GCCACCGCCACCg -3' miRNA: 3'- cAUGGCGGCcucCgCGGUGGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 34585 | 0.66 | 0.300284 |
Target: 5'- -cGCCGCauuccuGAGGUgGCCauGCCACCAgCCg -3' miRNA: 3'- caUGGCGgc----CUCCG-CGG--UGGUGGU-GG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 3286 | 0.66 | 0.315323 |
Target: 5'- -gACCGCaucuGGCGCCAgaucgUCACCAUCc -3' miRNA: 3'- caUGGCGgccuCCGCGGU-----GGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 31436 | 0.68 | 0.197998 |
Target: 5'- -aGCCGCCGacgugguugugcuaGccuuGGCGCCGCCGCCuugagGCUg -3' miRNA: 3'- caUGGCGGC--------------Cu---CCGCGGUGGUGG-----UGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 2109 | 0.74 | 0.079885 |
Target: 5'- aUGCCGCUGcAGGCGCCGCUggccaaguacaugcGCCGCg -3' miRNA: 3'- cAUGGCGGCcUCCGCGGUGG--------------UGGUGg -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 19808 | 0.67 | 0.25851 |
Target: 5'- cGUGCCGCCaugccGGUGCCgGCCAgCGCg -3' miRNA: 3'- -CAUGGCGGccu--CCGCGG-UGGUgGUGg -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 32361 | 0.66 | 0.278774 |
Target: 5'- gGUGCaucggGCCGGcGGCGUCGaUAUCGCCg -3' miRNA: 3'- -CAUGg----CGGCCuCCGCGGUgGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 7830 | 0.71 | 0.133191 |
Target: 5'- ---aCGCCGGcGGUGCgACCguaguGCCGCCa -3' miRNA: 3'- caugGCGGCCuCCGCGgUGG-----UGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 23018 | 0.73 | 0.095418 |
Target: 5'- -gGCCGCUGGcAGucuUGCCGCCACCgGCCg -3' miRNA: 3'- caUGGCGGCC-UCc--GCGGUGGUGG-UGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 29826 | 0.72 | 0.109739 |
Target: 5'- -aGCCgcGCCGGcGGCGCCGCCAaguCCu -3' miRNA: 3'- caUGG--CGGCCuCCGCGGUGGUgguGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 23008 | 0.73 | 0.092774 |
Target: 5'- --cCCGCCaGGAuGGCGaCCAgCACCGCUa -3' miRNA: 3'- cauGGCGG-CCU-CCGC-GGUgGUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 8664 | 0.67 | 0.239465 |
Target: 5'- -gACgGCCacuucGGCGCCGCCACCGa- -3' miRNA: 3'- caUGgCGGccu--CCGCGGUGGUGGUgg -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 22951 | 0.68 | 0.199572 |
Target: 5'- cUGCgGCCGGuGGCGgCAagACUGCCa -3' miRNA: 3'- cAUGgCGGCCuCCGCgGUggUGGUGG- -5' |
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11946 | 5' | -61.6 | NC_003278.1 | + | 30475 | 0.68 | 0.233382 |
Target: 5'- cGUGaaGCUGGc--CGCCgACCACCGCCa -3' miRNA: 3'- -CAUggCGGCCuccGCGG-UGGUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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