miRNA display CGI


Results 41 - 60 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 9713 0.67 0.245679
Target:  5'- uUGCuCGCCGGcugcaacaGCGCCccGCUAUCACCg -3'
miRNA:   3'- cAUG-GCGGCCuc------CGCGG--UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 23504 0.76 0.053882
Target:  5'- -cACCGCgGGAGaccagagcaagccGCGCCGCCugCGCUa -3'
miRNA:   3'- caUGGCGgCCUC-------------CGCGGUGGugGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6624 0.78 0.036072
Target:  5'- cGUACCGCCGGcuGCGUCAUCGCCgaagagaucGCCg -3'
miRNA:   3'- -CAUGGCGGCCucCGCGGUGGUGG---------UGG- -5'
11946 5' -61.6 NC_003278.1 + 6034 0.66 0.315323
Target:  5'- cUGCCGCCGGuGGaaguGCC-CUACgUGCCc -3'
miRNA:   3'- cAUGGCGGCCuCCg---CGGuGGUG-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 27114 0.66 0.307733
Target:  5'- -aACgCGCuCuGcGGCGCCACCuuCACCg -3'
miRNA:   3'- caUG-GCG-GcCuCCGCGGUGGugGUGG- -5'
11946 5' -61.6 NC_003278.1 + 9020 0.66 0.307733
Target:  5'- -gGCUauGCCGGcGGCaCCGCCGagCACCa -3'
miRNA:   3'- caUGG--CGGCCuCCGcGGUGGUg-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 21667 0.7 0.156882
Target:  5'- gGUGCC-CUGGugcucGGCGCCAgCGCC-CCg -3'
miRNA:   3'- -CAUGGcGGCCu----CCGCGGUgGUGGuGG- -5'
11946 5' -61.6 NC_003278.1 + 6105 0.7 0.161184
Target:  5'- cUACUGgcagaUCGGcGGuCGCCGCCGCUACCu -3'
miRNA:   3'- cAUGGC-----GGCCuCC-GCGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 11893 0.69 0.176614
Target:  5'- -cGCCGCgGGccGGCGCCgaccgcgaauggaacGCCcCCACCc -3'
miRNA:   3'- caUGGCGgCCu-CCGCGG---------------UGGuGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 22951 0.68 0.199572
Target:  5'- cUGCgGCCGGuGGCGgCAagACUGCCa -3'
miRNA:   3'- cAUGgCGGCCuCCGCgGUggUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 30475 0.68 0.233382
Target:  5'- cGUGaaGCUGGc--CGCCgACCACCGCCa -3'
miRNA:   3'- -CAUggCGGCCuccGCGG-UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 8664 0.67 0.239465
Target:  5'- -gACgGCCacuucGGCGCCGCCACCGa- -3'
miRNA:   3'- caUGgCGGccu--CCGCGGUGGUGGUgg -5'
11946 5' -61.6 NC_003278.1 + 6479 0.7 0.148589
Target:  5'- cGUGCUgcagGCCGGcaaGGGCGCCcaggacgaggugGUCACCACCg -3'
miRNA:   3'- -CAUGG----CGGCC---UCCGCGG------------UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 14691 0.7 0.144594
Target:  5'- -aGCCuCCGGcguGGGUGCCGgCACCuACCg -3'
miRNA:   3'- caUGGcGGCC---UCCGCGGUgGUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 14037 0.7 0.148589
Target:  5'- ---aCGCCGGAcauccuGGC-CCGCCACgGCCu -3'
miRNA:   3'- caugGCGGCCU------CCGcGGUGGUGgUGG- -5'
11946 5' -61.6 NC_003278.1 + 29826 0.72 0.109739
Target:  5'- -aGCCgcGCCGGcGGCGCCGCCAaguCCu -3'
miRNA:   3'- caUGG--CGGCCuCCGCGGUGGUgguGG- -5'
11946 5' -61.6 NC_003278.1 + 23008 0.73 0.092774
Target:  5'- --cCCGCCaGGAuGGCGaCCAgCACCGCUa -3'
miRNA:   3'- cauGGCGG-CCU-CCGC-GGUgGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 7333 0.66 0.292974
Target:  5'- uGUAuCUGCgCGcAGuGCagucuGCCACCGCCGCCg -3'
miRNA:   3'- -CAU-GGCG-GCcUC-CG-----CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 8759 0.66 0.292974
Target:  5'- -gGCCGCCcucGGcGGCGCugacugcucgCACCugCugCa -3'
miRNA:   3'- caUGGCGG---CCuCCGCG----------GUGGugGugG- -5'
11946 5' -61.6 NC_003278.1 + 4413 0.66 0.300284
Target:  5'- -cGCCGUCGaaGGGGCGaCCACgGaCgGCCg -3'
miRNA:   3'- caUGGCGGC--CUCCGC-GGUGgU-GgUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.