miRNA display CGI


Results 61 - 80 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 14691 0.7 0.144594
Target:  5'- -aGCCuCCGGcguGGGUGCCGgCACCuACCg -3'
miRNA:   3'- caUGGcGGCC---UCCGCGGUgGUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 6479 0.7 0.148589
Target:  5'- cGUGCUgcagGCCGGcaaGGGCGCCcaggacgaggugGUCACCACCg -3'
miRNA:   3'- -CAUGG----CGGCC---UCCGCGG------------UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 8935 0.7 0.148589
Target:  5'- uGUACCGCCGucu-CGCCGCCcacgaucaggucACCGCCg -3'
miRNA:   3'- -CAUGGCGGCcuccGCGGUGG------------UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 7333 0.66 0.292974
Target:  5'- uGUAuCUGCgCGcAGuGCagucuGCCACCGCCGCCg -3'
miRNA:   3'- -CAU-GGCG-GCcUC-CG-----CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 26599 0.66 0.285805
Target:  5'- cUACCcuGgCGGAcgcgaauGCGCCGCCGCCcGCCu -3'
miRNA:   3'- cAUGG--CgGCCUc------CGCGGUGGUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 8352 0.66 0.278774
Target:  5'- -cGCUGCCGcGcuGCGCCugguCUGCUACCa -3'
miRNA:   3'- caUGGCGGC-CucCGCGGu---GGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21053 0.66 0.278774
Target:  5'- uUGCCGCCgucguGGcGGUGCUgGCCGgCGCCg -3'
miRNA:   3'- cAUGGCGG-----CCuCCGCGG-UGGUgGUGG- -5'
11946 5' -61.6 NC_003278.1 + 15000 0.67 0.271882
Target:  5'- ---aCGCUGGccaacuccGGCGUCACCGCCgggACCu -3'
miRNA:   3'- caugGCGGCCu-------CCGCGGUGGUGG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 15142 0.67 0.271882
Target:  5'- cUGCUGCCaGAGGCGgUACCGgCAa- -3'
miRNA:   3'- cAUGGCGGcCUCCGCgGUGGUgGUgg -5'
11946 5' -61.6 NC_003278.1 + 12774 0.67 0.265128
Target:  5'- -aGCCucugGCCGGAGGaucaGCaggcggaaAUCGCCGCCc -3'
miRNA:   3'- caUGG----CGGCCUCCg---CGg-------UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21359 0.67 0.252027
Target:  5'- -aGCgCGUCGGcGGCGCCGCgAUCgACUg -3'
miRNA:   3'- caUG-GCGGCCuCCGCGGUGgUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 7785 0.67 0.250109
Target:  5'- -cACCGCCGGcgugaccgAGGCGguccucgaggcgaaCCACgGCCugGCCg -3'
miRNA:   3'- caUGGCGGCC--------UCCGC--------------GGUGgUGG--UGG- -5'
11946 5' -61.6 NC_003278.1 + 17168 0.67 0.245679
Target:  5'- -aAUCGCCGaccAGGCcaaCGCCGCCACUg -3'
miRNA:   3'- caUGGCGGCc--UCCGcg-GUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 8664 0.67 0.239465
Target:  5'- -gACgGCCacuucGGCGCCGCCACCGa- -3'
miRNA:   3'- caUGgCGGccu--CCGCGGUGGUGGUgg -5'
11946 5' -61.6 NC_003278.1 + 30475 0.68 0.233382
Target:  5'- cGUGaaGCUGGc--CGCCgACCACCGCCa -3'
miRNA:   3'- -CAUggCGGCCuccGCGG-UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 22951 0.68 0.199572
Target:  5'- cUGCgGCCGGuGGCGgCAagACUGCCa -3'
miRNA:   3'- cAUGgCGGCCuCCGCgGUggUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 11893 0.69 0.176614
Target:  5'- -cGCCGCgGGccGGCGCCgaccgcgaauggaacGCCcCCACCc -3'
miRNA:   3'- caUGGCGgCCu-CCGCGG---------------UGGuGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6105 0.7 0.161184
Target:  5'- cUACUGgcagaUCGGcGGuCGCCGCCGCUACCu -3'
miRNA:   3'- cAUGGC-----GGCCuCC-GCGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21667 0.7 0.156882
Target:  5'- gGUGCC-CUGGugcucGGCGCCAgCGCC-CCg -3'
miRNA:   3'- -CAUGGcGGCCu----CCGCGGUgGUGGuGG- -5'
11946 5' -61.6 NC_003278.1 + 14037 0.7 0.148589
Target:  5'- ---aCGCCGGAcauccuGGC-CCGCCACgGCCu -3'
miRNA:   3'- caugGCGGCCU------CCGcGGUGGUGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.