miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 19808 0.67 0.25851
Target:  5'- cGUGCCGCCaugccGGUGCCgGCCAgCGCg -3'
miRNA:   3'- -CAUGGCGGccu--CCGCGG-UGGUgGUGg -5'
11946 5' -61.6 NC_003278.1 + 22890 0.67 0.25851
Target:  5'- -aGCUGCaggauCGGcAGGC-CCGCCAgCGCCg -3'
miRNA:   3'- caUGGCG-----GCC-UCCGcGGUGGUgGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21359 0.67 0.252027
Target:  5'- -aGCgCGUCGGcGGCGCCGCgAUCgACUg -3'
miRNA:   3'- caUG-GCGGCCuCCGCGGUGgUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 7785 0.67 0.250109
Target:  5'- -cACCGCCGGcgugaccgAGGCGguccucgaggcgaaCCACgGCCugGCCg -3'
miRNA:   3'- caUGGCGGCC--------UCCGC--------------GGUGgUGG--UGG- -5'
11946 5' -61.6 NC_003278.1 + 19490 0.67 0.245679
Target:  5'- -gGuuGCCGGcGGCgGCCAUCugCugaGCCa -3'
miRNA:   3'- caUggCGGCCuCCG-CGGUGGugG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 17168 0.67 0.245679
Target:  5'- -aAUCGCCGaccAGGCcaaCGCCGCCACUg -3'
miRNA:   3'- caUGGCGGCc--UCCGcg-GUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 9713 0.67 0.245679
Target:  5'- uUGCuCGCCGGcugcaacaGCGCCccGCUAUCACCg -3'
miRNA:   3'- cAUG-GCGGCCuc------CGCGG--UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 5234 0.67 0.245679
Target:  5'- -aGCaGUCGGucaGGGCGaCACUGCCGCCa -3'
miRNA:   3'- caUGgCGGCC---UCCGCgGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 8664 0.67 0.239465
Target:  5'- -gACgGCCacuucGGCGCCGCCACCGa- -3'
miRNA:   3'- caUGgCGGccu--CCGCGGUGGUGGUgg -5'
11946 5' -61.6 NC_003278.1 + 12400 0.67 0.239465
Target:  5'- uGUGCCaaGCgGGcgaGGGCGCCGCCGgUAUg -3'
miRNA:   3'- -CAUGG--CGgCC---UCCGCGGUGGUgGUGg -5'
11946 5' -61.6 NC_003278.1 + 13520 0.68 0.233382
Target:  5'- -cGCaCGCCuuccacguGGAGG-GCCGCaugCACCGCCg -3'
miRNA:   3'- caUG-GCGG--------CCUCCgCGGUG---GUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 30475 0.68 0.233382
Target:  5'- cGUGaaGCUGGc--CGCCgACCACCGCCa -3'
miRNA:   3'- -CAUggCGGCCuccGCGG-UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6375 0.68 0.22743
Target:  5'- aUGCC-CUGGugcgGGGCaGUgGCCGCCGCCu -3'
miRNA:   3'- cAUGGcGGCC----UCCG-CGgUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21734 0.68 0.221606
Target:  5'- ---gCGCCGG-GGCGCUggcGCCGagCACCa -3'
miRNA:   3'- caugGCGGCCuCCGCGG---UGGUg-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 14690 0.68 0.215911
Target:  5'- -cACCGCCGaccAGGCcguuGCCGgCCAgCACCu -3'
miRNA:   3'- caUGGCGGCc--UCCG----CGGU-GGUgGUGG- -5'
11946 5' -61.6 NC_003278.1 + 26647 0.68 0.20979
Target:  5'- cGU-CCGCCaGGguAGGCGCCgaugaucgcgcugACCACCuggcGCCg -3'
miRNA:   3'- -CAuGGCGG-CC--UCCGCGG-------------UGGUGG----UGG- -5'
11946 5' -61.6 NC_003278.1 + 14872 0.68 0.199572
Target:  5'- -cGCCGUCGGGGuaGUgACCGCCucGCUg -3'
miRNA:   3'- caUGGCGGCCUCcgCGgUGGUGG--UGG- -5'
11946 5' -61.6 NC_003278.1 + 22951 0.68 0.199572
Target:  5'- cUGCgGCCGGuGGCGgCAagACUGCCa -3'
miRNA:   3'- cAUGgCGGCCuCCGCgGUggUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 31436 0.68 0.197998
Target:  5'- -aGCCGCCGacgugguugugcuaGccuuGGCGCCGCCGCCuugagGCUg -3'
miRNA:   3'- caUGGCGGC--------------Cu---CCGCGGUGGUGG-----UGG- -5'
11946 5' -61.6 NC_003278.1 + 11893 0.69 0.176614
Target:  5'- -cGCCGCgGGccGGCGCCgaccgcgaauggaacGCCcCCACCc -3'
miRNA:   3'- caUGGCGgCCu-CCGCGG---------------UGGuGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.