Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11947 | 3' | -58.3 | NC_003278.1 | + | 11900 | 0.69 | 0.263895 |
Target: 5'- aGGUCGCCGGucaacacACGGaCgCGCuGCGCGGc -3' miRNA: 3'- gCUAGUGGCU-------UGCC-G-GCGuCGCGCUu -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 8618 | 0.69 | 0.257786 |
Target: 5'- gGGUCAUgCGGAUGGCCucaGCAGgGCGGc -3' miRNA: 3'- gCUAGUG-GCUUGCCGG---CGUCgCGCUu -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 29262 | 0.7 | 0.238258 |
Target: 5'- gCGAucuUCACCGGcaGCGGCgCGCAGCuuGAc -3' miRNA: 3'- -GCU---AGUGGCU--UGCCG-GCGUCGcgCUu -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 24431 | 0.7 | 0.232029 |
Target: 5'- uCGAUgGCaCGAaaauauuaguGCGGCCGCAGCaggGUGAGa -3' miRNA: 3'- -GCUAgUG-GCU----------UGCCGGCGUCG---CGCUU- -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 5001 | 0.7 | 0.232029 |
Target: 5'- gCGAUCGCCGAGCacaGCCGCGaccuGgGUGAGc -3' miRNA: 3'- -GCUAGUGGCUUGc--CGGCGU----CgCGCUU- -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 1179 | 0.71 | 0.214162 |
Target: 5'- aGGUUuCCGGAUagGGCCGCucguGCGCGAu -3' miRNA: 3'- gCUAGuGGCUUG--CCGGCGu---CGCGCUu -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 19753 | 0.71 | 0.202917 |
Target: 5'- cCGG-CACCGGcAUGGCgGCAcGCGCGAc -3' miRNA: 3'- -GCUaGUGGCU-UGCCGgCGU-CGCGCUu -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 32701 | 0.72 | 0.172215 |
Target: 5'- cCGGUCACCGAcugggACGGCC-CAGC-CGGc -3' miRNA: 3'- -GCUAGUGGCU-----UGCCGGcGUCGcGCUu -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 4426 | 0.72 | 0.17174 |
Target: 5'- gCGAcCA-CGGACGGCCGCaacaucgAGCGCGAc -3' miRNA: 3'- -GCUaGUgGCUUGCCGGCG-------UCGCGCUu -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 30814 | 0.72 | 0.158473 |
Target: 5'- cCGAUCGCCcagcgcGAcaGCGGCCagaGCGGCGUGAu -3' miRNA: 3'- -GCUAGUGG------CU--UGCCGG---CGUCGCGCUu -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 33270 | 0.73 | 0.133926 |
Target: 5'- gCGAUgGCCu--CGGCCGCAGCcgGCGGAa -3' miRNA: 3'- -GCUAgUGGcuuGCCGGCGUCG--CGCUU- -5' |
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11947 | 3' | -58.3 | NC_003278.1 | + | 3006 | 1.06 | 0.00049 |
Target: 5'- gCGAUCACCGAACGGCCGCAGCGCGAAc -3' miRNA: 3'- -GCUAGUGGCUUGCCGGCGUCGCGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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