Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11948 | 3' | -52.7 | NC_003278.1 | + | 12721 | 0.72 | 0.399999 |
Target: 5'- uGgCGACGAaguucguugucaugcGCUGGCGCccAUCuGCAGGg -3' miRNA: 3'- gCaGCUGCU---------------UGACCGUG--UAGuCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 14046 | 0.73 | 0.350592 |
Target: 5'- uGUCGGCuGACUGggcGCACGUCgucgAGCAGGc -3' miRNA: 3'- gCAGCUGcUUGAC---CGUGUAG----UCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 30168 | 0.75 | 0.271009 |
Target: 5'- -cUCGGCGcggaUGGC-CAUCAGCAGGa -3' miRNA: 3'- gcAGCUGCuug-ACCGuGUAGUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 13461 | 0.7 | 0.541814 |
Target: 5'- gCGUCGACGcugaugGACguaGGC-CGUCaAGCGGGc -3' miRNA: 3'- -GCAGCUGC------UUGa--CCGuGUAG-UCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 17734 | 0.69 | 0.564248 |
Target: 5'- aGUUGGCGucgguGCUGGgGC-UCuGCAGGu -3' miRNA: 3'- gCAGCUGCu----UGACCgUGuAGuCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 30016 | 0.66 | 0.766773 |
Target: 5'- cCGU-GGCGuuCUGGCuCAUCAcCAGGg -3' miRNA: 3'- -GCAgCUGCuuGACCGuGUAGUcGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 18961 | 0.67 | 0.712252 |
Target: 5'- gGUCGcggccacauCGAACUGcaGCAgGUCgAGCAGGu -3' miRNA: 3'- gCAGCu--------GCUUGAC--CGUgUAG-UCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 30334 | 0.67 | 0.712252 |
Target: 5'- ---aGGCGAGCUGGUGCucggaCAGCGGc -3' miRNA: 3'- gcagCUGCUUGACCGUGua---GUCGUCc -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 30389 | 0.68 | 0.655588 |
Target: 5'- gCGUUGACGGcgucCUGGCGCuccagggccaucGUCAuCAGGg -3' miRNA: 3'- -GCAGCUGCUu---GACCGUG------------UAGUcGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 2309 | 0.68 | 0.644136 |
Target: 5'- uGUCuaugGAgGGGCUGGCcaaGUCGGUGGGg -3' miRNA: 3'- gCAG----CUgCUUGACCGug-UAGUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 9630 | 0.68 | 0.644136 |
Target: 5'- gGUCGGCcuGGGcCUGGCGC-UC-GCGGGa -3' miRNA: 3'- gCAGCUG--CUU-GACCGUGuAGuCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 19002 | 0.68 | 0.621208 |
Target: 5'- uCGgUGAUGGucgGCUGGCugAUgcgCGGCAGGa -3' miRNA: 3'- -GCaGCUGCU---UGACCGugUA---GUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 30602 | 0.69 | 0.586919 |
Target: 5'- -uUCGAUGAACUuugccGGCGgGacucuuUCAGCAGGu -3' miRNA: 3'- gcAGCUGCUUGA-----CCGUgU------AGUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 18877 | 0.69 | 0.575558 |
Target: 5'- -uUCGAUGGACUgGGCGCcgcgcuugAUCGGCuGGu -3' miRNA: 3'- gcAGCUGCUUGA-CCGUG--------UAGUCGuCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 19987 | 0.69 | 0.564248 |
Target: 5'- uGUCGGUGAACUuGCugGacagCGGCAGGg -3' miRNA: 3'- gCAGCUGCUUGAcCGugUa---GUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 22073 | 0.81 | 0.103757 |
Target: 5'- --cCGACGAACUGGCGCGcCGGCuGGg -3' miRNA: 3'- gcaGCUGCUUGACCGUGUaGUCGuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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