Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11948 | 3' | -52.7 | NC_003278.1 | + | 3115 | 1.11 | 0.00093 |
Target: 5'- uCGUCGACGAACUGGCACAUCAGCAGGu -3' miRNA: 3'- -GCAGCUGCUUGACCGUGUAGUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 22073 | 0.81 | 0.103757 |
Target: 5'- --cCGACGAACUGGCGCGcCGGCuGGg -3' miRNA: 3'- gcaGCUGCUUGACCGUGUaGUCGuCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 30168 | 0.75 | 0.271009 |
Target: 5'- -cUCGGCGcggaUGGC-CAUCAGCAGGa -3' miRNA: 3'- gcAGCUGCuug-ACCGuGUAGUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 5406 | 0.74 | 0.293248 |
Target: 5'- gCGUCGACGAGCUgcagGGCgagaagaucgGCAUCGGCGu- -3' miRNA: 3'- -GCAGCUGCUUGA----CCG----------UGUAGUCGUcc -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 14046 | 0.73 | 0.350592 |
Target: 5'- uGUCGGCuGACUGggcGCACGUCgucgAGCAGGc -3' miRNA: 3'- gCAGCUGcUUGAC---CGUGUAG----UCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 12721 | 0.72 | 0.399999 |
Target: 5'- uGgCGACGAaguucguugucaugcGCUGGCGCccAUCuGCAGGg -3' miRNA: 3'- gCaGCUGCU---------------UGACCGUG--UAGuCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 12423 | 0.72 | 0.405757 |
Target: 5'- uGUCGGCGAucgACUGGCGgAUgugugccaAGCGGGc -3' miRNA: 3'- gCAGCUGCU---UGACCGUgUAg-------UCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 12994 | 0.71 | 0.445436 |
Target: 5'- uCG-CGGCGAGCUGGUcgAgGUCAGCGcccuGGg -3' miRNA: 3'- -GCaGCUGCUUGACCG--UgUAGUCGU----CC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 28127 | 0.71 | 0.476574 |
Target: 5'- aGUgCGGCGAcacCUGGCACAUCA--AGGa -3' miRNA: 3'- gCA-GCUGCUu--GACCGUGUAGUcgUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 14352 | 0.71 | 0.476574 |
Target: 5'- gGUCGcCGAGCUGGUACugccgauggccAUCGGUGGa -3' miRNA: 3'- gCAGCuGCUUGACCGUG-----------UAGUCGUCc -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 5688 | 0.7 | 0.502242 |
Target: 5'- gGUCGAgGGcCUGGCGCuUgaggaucgcgucgcgCAGCAGGg -3' miRNA: 3'- gCAGCUgCUuGACCGUGuA---------------GUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 22434 | 0.7 | 0.507667 |
Target: 5'- gGUCGACGGcGCUGGuCAgguagccCGUCAcGCGGGc -3' miRNA: 3'- gCAGCUGCU-UGACC-GU-------GUAGU-CGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 18827 | 0.7 | 0.508754 |
Target: 5'- uGUCGG-GAGCguucuGCAgGUCAGCGGGa -3' miRNA: 3'- gCAGCUgCUUGac---CGUgUAGUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 13283 | 0.7 | 0.519686 |
Target: 5'- gCGUCGACGA--UGGC----CAGCAGGu -3' miRNA: 3'- -GCAGCUGCUugACCGuguaGUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 13968 | 0.7 | 0.5407 |
Target: 5'- aCGUCGACGGugauuucgaagguGCcgGGgACGcCGGCGGGg -3' miRNA: 3'- -GCAGCUGCU-------------UGa-CCgUGUaGUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 13461 | 0.7 | 0.541814 |
Target: 5'- gCGUCGACGcugaugGACguaGGC-CGUCaAGCGGGc -3' miRNA: 3'- -GCAGCUGC------UUGa--CCGuGUAG-UCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 6098 | 0.69 | 0.552997 |
Target: 5'- uGUCGcucuACUGGCAgAUCGGCGGu -3' miRNA: 3'- gCAGCugcuUGACCGUgUAGUCGUCc -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 17734 | 0.69 | 0.564248 |
Target: 5'- aGUUGGCGucgguGCUGGgGC-UCuGCAGGu -3' miRNA: 3'- gCAGCUGCu----UGACCgUGuAGuCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 19987 | 0.69 | 0.564248 |
Target: 5'- uGUCGGUGAACUuGCugGacagCGGCAGGg -3' miRNA: 3'- gCAGCUGCUUGAcCGugUa---GUCGUCC- -5' |
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11948 | 3' | -52.7 | NC_003278.1 | + | 18877 | 0.69 | 0.575558 |
Target: 5'- -uUCGAUGGACUgGGCGCcgcgcuugAUCGGCuGGu -3' miRNA: 3'- gcAGCUGCUUGA-CCGUG--------UAGUCGuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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