miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11948 3' -52.7 NC_003278.1 + 13461 0.7 0.541814
Target:  5'- gCGUCGACGcugaugGACguaGGC-CGUCaAGCGGGc -3'
miRNA:   3'- -GCAGCUGC------UUGa--CCGuGUAG-UCGUCC- -5'
11948 3' -52.7 NC_003278.1 + 13968 0.7 0.5407
Target:  5'- aCGUCGACGGugauuucgaagguGCcgGGgACGcCGGCGGGg -3'
miRNA:   3'- -GCAGCUGCU-------------UGa-CCgUGUaGUCGUCC- -5'
11948 3' -52.7 NC_003278.1 + 13283 0.7 0.519686
Target:  5'- gCGUCGACGA--UGGC----CAGCAGGu -3'
miRNA:   3'- -GCAGCUGCUugACCGuguaGUCGUCC- -5'
11948 3' -52.7 NC_003278.1 + 18827 0.7 0.508754
Target:  5'- uGUCGG-GAGCguucuGCAgGUCAGCGGGa -3'
miRNA:   3'- gCAGCUgCUUGac---CGUgUAGUCGUCC- -5'
11948 3' -52.7 NC_003278.1 + 22434 0.7 0.507667
Target:  5'- gGUCGACGGcGCUGGuCAgguagccCGUCAcGCGGGc -3'
miRNA:   3'- gCAGCUGCU-UGACC-GU-------GUAGU-CGUCC- -5'
11948 3' -52.7 NC_003278.1 + 5688 0.7 0.502242
Target:  5'- gGUCGAgGGcCUGGCGCuUgaggaucgcgucgcgCAGCAGGg -3'
miRNA:   3'- gCAGCUgCUuGACCGUGuA---------------GUCGUCC- -5'
11948 3' -52.7 NC_003278.1 + 14352 0.71 0.476574
Target:  5'- gGUCGcCGAGCUGGUACugccgauggccAUCGGUGGa -3'
miRNA:   3'- gCAGCuGCUUGACCGUG-----------UAGUCGUCc -5'
11948 3' -52.7 NC_003278.1 + 28127 0.71 0.476574
Target:  5'- aGUgCGGCGAcacCUGGCACAUCA--AGGa -3'
miRNA:   3'- gCA-GCUGCUu--GACCGUGUAGUcgUCC- -5'
11948 3' -52.7 NC_003278.1 + 12994 0.71 0.445436
Target:  5'- uCG-CGGCGAGCUGGUcgAgGUCAGCGcccuGGg -3'
miRNA:   3'- -GCaGCUGCUUGACCG--UgUAGUCGU----CC- -5'
11948 3' -52.7 NC_003278.1 + 12423 0.72 0.405757
Target:  5'- uGUCGGCGAucgACUGGCGgAUgugugccaAGCGGGc -3'
miRNA:   3'- gCAGCUGCU---UGACCGUgUAg-------UCGUCC- -5'
11948 3' -52.7 NC_003278.1 + 12721 0.72 0.399999
Target:  5'- uGgCGACGAaguucguugucaugcGCUGGCGCccAUCuGCAGGg -3'
miRNA:   3'- gCaGCUGCU---------------UGACCGUG--UAGuCGUCC- -5'
11948 3' -52.7 NC_003278.1 + 14046 0.73 0.350592
Target:  5'- uGUCGGCuGACUGggcGCACGUCgucgAGCAGGc -3'
miRNA:   3'- gCAGCUGcUUGAC---CGUGUAG----UCGUCC- -5'
11948 3' -52.7 NC_003278.1 + 5406 0.74 0.293248
Target:  5'- gCGUCGACGAGCUgcagGGCgagaagaucgGCAUCGGCGu- -3'
miRNA:   3'- -GCAGCUGCUUGA----CCG----------UGUAGUCGUcc -5'
11948 3' -52.7 NC_003278.1 + 30168 0.75 0.271009
Target:  5'- -cUCGGCGcggaUGGC-CAUCAGCAGGa -3'
miRNA:   3'- gcAGCUGCuug-ACCGuGUAGUCGUCC- -5'
11948 3' -52.7 NC_003278.1 + 22073 0.81 0.103757
Target:  5'- --cCGACGAACUGGCGCGcCGGCuGGg -3'
miRNA:   3'- gcaGCUGCUUGACCGUGUaGUCGuCC- -5'
11948 3' -52.7 NC_003278.1 + 3115 1.11 0.00093
Target:  5'- uCGUCGACGAACUGGCACAUCAGCAGGu -3'
miRNA:   3'- -GCAGCUGCUUGACCGUGUAGUCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.