miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11949 5' -63.8 NC_003278.1 + 34574 0.66 0.195427
Target:  5'- -----gUGCCGCCaCACCUUCGCCagCCa -3'
miRNA:   3'- ucuacgACGGCGG-GUGGGAGCGG--GGa -5'
11949 5' -63.8 NC_003278.1 + 7825 0.66 0.195427
Target:  5'- ---gGCcugGCCGaccacggcCCCACCCUCcCCCCUg -3'
miRNA:   3'- ucuaCGa--CGGC--------GGGUGGGAGcGGGGA- -5'
11949 5' -63.8 NC_003278.1 + 13144 0.67 0.175708
Target:  5'- cGAUGCcucgGCCGUCaGCCCaUCGCCUg- -3'
miRNA:   3'- uCUACGa---CGGCGGgUGGG-AGCGGGga -5'
11949 5' -63.8 NC_003278.1 + 31625 0.67 0.175708
Target:  5'- aAGcAUGCcGCCGCCCuCCCUgCGUuuUCCUg -3'
miRNA:   3'- -UC-UACGaCGGCGGGuGGGA-GCG--GGGA- -5'
11949 5' -63.8 NC_003278.1 + 22328 0.67 0.168328
Target:  5'- --cUGCUGagaCGCauccugugaucgaugCCGCCCUCGCCCg- -3'
miRNA:   3'- ucuACGACg--GCG---------------GGUGGGAGCGGGga -5'
11949 5' -63.8 NC_003278.1 + 8149 0.68 0.157779
Target:  5'- cAGAUGUcGCC-CUCGCCCgugUGCCCUg -3'
miRNA:   3'- -UCUACGaCGGcGGGUGGGa--GCGGGGa -5'
11949 5' -63.8 NC_003278.1 + 28177 0.68 0.157779
Target:  5'- cAGGUGUcGCCGCaCUugCCgCGCCCg- -3'
miRNA:   3'- -UCUACGaCGGCG-GGugGGaGCGGGga -5'
11949 5' -63.8 NC_003278.1 + 9708 0.68 0.145435
Target:  5'- uGAUGUUGCuCGCCgGCUgcaacagCGCCCCg -3'
miRNA:   3'- uCUACGACG-GCGGgUGGga-----GCGGGGa -5'
11949 5' -63.8 NC_003278.1 + 13188 0.68 0.14152
Target:  5'- cGGUGCagGCCGCCCAgggcaaCggcagCGCCCCg -3'
miRNA:   3'- uCUACGa-CGGCGGGUgg----Ga----GCGGGGa -5'
11949 5' -63.8 NC_003278.1 + 5494 0.69 0.130348
Target:  5'- cGAUGgUGCCGCUgaCGCCgaugccgaucuuCUCGCCCUg -3'
miRNA:   3'- uCUACgACGGCGG--GUGG------------GAGCGGGGa -5'
11949 5' -63.8 NC_003278.1 + 16621 0.69 0.130348
Target:  5'- -cGUGCgaccgGCUGUCCAUCCUCGCCa-- -3'
miRNA:   3'- ucUACGa----CGGCGGGUGGGAGCGGgga -5'
11949 5' -63.8 NC_003278.1 + 12796 0.7 0.107379
Target:  5'- aGGcgGaaaucGCCGCCCG-CCUCGCCCUg -3'
miRNA:   3'- -UCuaCga---CGGCGGGUgGGAGCGGGGa -5'
11949 5' -63.8 NC_003278.1 + 4485 0.71 0.090771
Target:  5'- cGAUGUUGCgGCCguCCguggUCGCCCCUu -3'
miRNA:   3'- uCUACGACGgCGGguGGg---AGCGGGGA- -5'
11949 5' -63.8 NC_003278.1 + 26616 0.72 0.070362
Target:  5'- -aAUGCgccGCCGCCCGCCUggGCCUCg -3'
miRNA:   3'- ucUACGa--CGGCGGGUGGGagCGGGGa -5'
11949 5' -63.8 NC_003278.1 + 4230 1.06 0.000121
Target:  5'- cAGAUGCUGCCGCCCACCCUCGCCCCUc -3'
miRNA:   3'- -UCUACGACGGCGGGUGGGAGCGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.